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8B2L

Cryo-EM structure of the plant 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A1)
40S ribosomal protein S4polymer26429971.21UniProt (A0A1S4DQ51)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Nicotiana tabacum (common tobacco)
2B
(k1)
40S ribosomal protein S6polymer24928368.31UniProt (A0A1S3Z3Y7)
Pfam (PF01092)
Nicotiana tabacum (common tobacco)
3C
(h1)
18S rRNApolymer1808583622.21Nicotiana tabacum
4D
(l1)
40S ribosomal protein S10-1-likepolymer20823121.41UniProt (A0A1S4DHU6)
Pfam (PF03501)
Nicotiana tabacum (common tobacco)
5E
(C1)
40S ribosomal protein S12polymer14415190.61UniProt (A0A1S4B129)
Pfam (PF01248)
Nicotiana tabacum (common tobacco)
6F
(D1)
40S ribosomal protein S17-likepolymer14916643.31UniProt (A0A1S3Z9G2)
Pfam (PF00833)
Nicotiana tabacum (common tobacco)
7G
(E1)
40S ribosomal protein S19-3polymer14316034.41UniProt (A0A1S3Y949)
Pfam (PF01090)
Nicotiana tabacum (common tobacco)
8H
(F1)
40S ribosomal protein S3apolymer26129782.61UniProt (Q285L8)
Pfam (PF01015)
Nicotiana tabacum (common tobacco)Protein cyc07
9I
(G1)
40S ribosomal protein S21polymer839307.51UniProt (A0A1S4A3T4)
Pfam (PF01249)
Nicotiana tabacum (common tobacco)
10J
(H1)
40S ribosomal protein S24polymer13315429.31UniProt (A0A1S3ZXI6)
Pfam (PF01282)
Nicotiana tabacum (common tobacco)
11K
(I1)
40S ribosomal protein S25polymer10711795.91UniProt (A0A076L2E2)
Pfam (PF03297)
Nicotiana tabacum (common tobacco)
12L
(J1)
40S ribosomal protein S26polymer12714540.11UniProt (A0A1S4CWI7)
Pfam (PF01283)
Nicotiana tabacum (common tobacco)
13M
(K1)
40S ribosomal protein S27polymer869613.11UniProt (A0A1S3XJK0)
Pfam (PF01667)
Nicotiana tabacum (common tobacco)
14N
(L1)
40S ribosomal protein S28polymer657481.71UniProt (A0A1S4AS05)
Pfam (PF01200)
Nicotiana tabacum (common tobacco)
15O
(M1)
40S ribosomal protein S30polymer626953.31UniProt (A0A1S3XGJ0)
Pfam (PF04758)
Nicotiana tabacum (common tobacco)
16P
(N1)
ubiquitin-40S ribosomal protein S27a-likepolymer15617739.71UniProt (A0A1S4C0C1)
Pfam (PF00240)
Pfam (PF01599)
Nicotiana tabacum (common tobacco)
17Q
(O1)
40S ribosomal protein S7polymer19122121.51UniProt (A0A1S3Z906)
Pfam (PF01251)
Nicotiana tabacum (common tobacco)
18R
(P1)
40S ribosomal protein S8polymer22425164.01UniProt (A0A1S4CZK3)
Pfam (PF01201)
Nicotiana tabacum (common tobacco)
19S
(Q1)
guanine nucleotide-binding protein subunit beta-like proteinpolymer32836061.81UniProt (A0A1S4ABX7)
Pfam (PF00400)
Nicotiana tabacum (common tobacco)
20T
(R1)
40S ribosomal protein S20-2polymer12213651.91UniProt (A0A1S3XHL0)
Pfam (PF00338)
Nicotiana tabacum (common tobacco)
21U
(S1)
40S ribosomal protein S14-2polymer15016375.81UniProt (A0A1S3XAN1)
Pfam (PF00411)
Nicotiana tabacum (common tobacco)
22V
(T1)
40S ribosomal protein S23polymer14215771.61UniProt (A0A1S4C879)
Pfam (PF00164)
Nicotiana tabacum (common tobacco)
23W
(U1)
40S ribosomal protein S18polymer15217578.51UniProt (A0A1S3YM01)
Pfam (PF00416)
Nicotiana tabacum (common tobacco)
24X
(V1)
40S ribosomal protein S29polymer566455.61UniProt (A0A1S4DPT4)
Pfam (PF00253)
Nicotiana tabacum (common tobacco)
25Y
(W1)
30S ribosomal protein S15, chloroplasticpolymer15117099.31UniProt (A0A1S3ZRI7)
Pfam (PF08069)
Pfam (PF00312)
Nicotiana tabacum (common tobacco)
26Z
(X1)
40S ribosomal protein S11-likepolymer15917724.81UniProt (A0A1S4BW10)
Pfam (PF16205)
Pfam (PF00366)
Nicotiana tabacum (common tobacco)
27AA
(Y1)
40S ribosomal protein S15-likepolymer15217274.41UniProt (A0A1S4DFI4)
Pfam (PF00203)
Nicotiana tabacum (common tobacco)
28BA
(Z1)
40S ribosomal protein SApolymer33635894.11UniProt (A0A1S3Y4M0)
Pfam (PF00318)
Nicotiana tabacum (common tobacco)
29CA
(a1)
40S ribosomal protein S3-2-likepolymer24827758.51UniProt (A0A1S4BXU2)
Pfam (PF07650)
Pfam (PF00189)
Nicotiana tabacum (common tobacco)
30DA
(b1)
40S ribosomal protein S9-2-likepolymer19723103.81UniProt (A0A1S4B907)
Pfam (PF00163)
Pfam (PF01479)
Nicotiana tabacum (common tobacco)
31EA
(c1)
40S ribosomal protein S2-3-likepolymer28030652.71UniProt (A0A1S3XAX8)
Pfam (PF00333)
Pfam (PF03719)
Nicotiana tabacum (common tobacco)
32FA
(d1)
40S ribosomal protein S5-likepolymer21023373.91UniProt (A0A1S4BXT5)
Pfam (PF00177)
Nicotiana tabacum (common tobacco)
33GA
(e1)
40S ribosomal protein S15a-1polymer13014815.41UniProt (A0A1S4DBQ8)
Pfam (PF00410)
Nicotiana tabacum (common tobacco)40S ribosomal protein S15a-1 isoform X1
34HA
(f1)
40S ribosomal protein S16polymer14716731.71UniProt (A0A1S4AU23)
Pfam (PF00380)
Nicotiana tabacum (common tobacco)
35IA
(B1)
mRNApolymer123629.01Nicotiana tabacum
36JA, KA
(i2, W2)
tRNApolymer7624571.62GenBank (19120)Nicotiana tabacum (common tobacco)
37LA
(C3)
5S rRNApolymer11938328.81GenBank (2276356346)Nicotiana tabacum (common tobacco)
38MA
(D3)
60S ribosomal protein L13polymer20623595.51UniProt (A0A1S4CSN1)
Pfam (PF01294)
Nicotiana tabacum (common tobacco)
39NA
(E3)
60S ribosomal protein L14-1polymer13415443.41UniProt (A0A1S4A807)
Pfam (PF01929)
Nicotiana tabacum (common tobacco)
40OA
(F3)
Ribosomal protein L15polymer20424228.31UniProt (A0A1S4D5P7)
Pfam (PF00827)
Nicotiana tabacum (common tobacco)
41PA
(G3)
60S ribosomal protein L18-2-likepolymer18720905.81UniProt (A0A1S4DF55)
Pfam (PF17135)
Nicotiana tabacum (common tobacco)
42QA
(H3)
Ribosomal protein L19polymer21425055.71UniProt (A0A1S3X0I4)
Pfam (PF01280)
Nicotiana tabacum (common tobacco)
43RA
(I3)
60S ribosomal protein L18apolymer17821513.31UniProt (A0A1S4CP52)
Pfam (PF01775)
Nicotiana tabacum (common tobacco)
44SA
(J3)
60S ribosomal protein L21-1-likepolymer16418716.91UniProt (A0A1S3XCW6)
Pfam (PF01157)
Nicotiana tabacum (common tobacco)
45TA
(K3)
60S ribosomal protein L22-2-likepolymer12714277.41UniProt (A0A1S4BSU3)
Pfam (PF01776)
Nicotiana tabacum (common tobacco)
46UA
(L3)
60S ribosomal protein L24-likepolymer16418606.01UniProt (A0A1S4BHF2)
Pfam (PF01246)
Nicotiana tabacum (common tobacco)
47VA
(M3)
eL27 (60S ribosomal protein L27)polymer13515722.71UniProt (A0A1S4AEL0)
Pfam (PF00467)
Pfam (PF01777)
Nicotiana tabacum (common tobacco)
48WA
(N3)
eL28 (60S ribosomal protein L28)polymer14315954.61UniProt (A0A1S4D1U6)
Pfam (PF01778)
Nicotiana tabacum (common tobacco)
49XA
(O3)
60S ribosomal protein L29polymer617132.01UniProt (A0A1S3YR12)
Pfam (PF01779)
Nicotiana tabacum (common tobacco)
50YA
(P3)
60S ribosomal protein L30-likepolymer11312420.51UniProt (A0A1S3WZ09)
Pfam (PF01248)
Nicotiana tabacum (common tobacco)
51ZA
(Q3)
eL31 (60S ribosomal protein L31)polymer12013894.21UniProt (A0A1S3Y3V5)
Pfam (PF01198)
Nicotiana tabacum (common tobacco)
52AB
(R3)
60S ribosomal protein L32-1polymer13315665.51UniProt (A0A1S3Z2X4)
Pfam (PF01655)
Nicotiana tabacum (common tobacco)
53BB
(S3)
eL33 (60S ribosomal protein L35a)polymer11212959.21UniProt (A0A1S3XU79)
Pfam (PF01247)
Nicotiana tabacum (common tobacco)
54CB
(T3)
60S ribosomal protein L34polymer12013788.41UniProt (P41098)
Pfam (PF01199)
Nicotiana tabacum (common tobacco)
55DB
(U3)
eL36 (60S ribosomal protein L36)polymer11012361.81UniProt (A0A1S4D2I2)
Pfam (PF01158)
Nicotiana tabacum (common tobacco)
56EB
(V3)
Ribosomal protein L37polymer9510879.81UniProt (A0A1S4DN51)
Pfam (PF01907)
Nicotiana tabacum (common tobacco)
57FB
(W3)
60S ribosomal protein L38polymer698101.71UniProt (A0A1S4C4G8)
Pfam (PF01781)
Nicotiana tabacum (common tobacco)
58GB
(X3)
60S ribosomal protein L39-3polymer516503.81UniProt (A0A1S3YR32)
Pfam (PF00832)
Nicotiana tabacum (common tobacco)
59HB
(Y3)
ubiquitin-60S ribosomal protein L40polymer12814717.41UniProt (A0A1S3X011)
Pfam (PF00240)
Pfam (PF01020)
Nicotiana tabacum (common tobacco)
60IB
(p3)
60S ribosomal protein L41polymer253445.41UniProt (P62121)
Pfam (PF05162)
Nicotiana tabacum (common tobacco)
61JB
(Z3)
60S ribosomal protein L44polymer10512037.31UniProt (A0A1S4AVP7)
Pfam (PF00935)
Nicotiana tabacum (common tobacco)
62KB
(a3)
60S ribosomal protein L37apolymer9210280.11UniProt (A0A1S3X5Y9)
Pfam (PF01780)
Nicotiana tabacum (common tobacco)
63LB
(b3)
eL6 (60S ribosomal protein L6)polymer23025536.41UniProt (A0A1S4B0G2)
Pfam (PF03868)
Pfam (PF01159)
Nicotiana tabacum (common tobacco)
64MB
(c3)
60S ribosomal protein L7apolymer25829432.21UniProt (A0A1S4D668)
Pfam (PF01248)
Nicotiana tabacum (common tobacco)
65NB
(d3)
uL13 (60S ribosomal protein L13a)polymer20623525.21UniProt (A0A1S4DN49)
Pfam (PF00572)
Nicotiana tabacum (common tobacco)
66OB
(e3)
60S ribosomal protein L23polymer14015040.91UniProt (A0A1S3XSQ1)
Pfam (PF00238)
Nicotiana tabacum (common tobacco)
67PB
(f3)
uL15 (60S ribosomal protein L27a)polymer14816578.41UniProt (A0A1S4BFD5)
Pfam (PF00828)
Nicotiana tabacum (common tobacco)
68QB
(g3)
uL16 (60S ribosomal protein L10)polymer22125012.41UniProt (A0A1S3Z2D7)
Pfam (PF00252)
Nicotiana tabacum (common tobacco)
69RB
(h3)
60S ribosomal protein L5-likepolymer30134627.31UniProt (A0A1S3XE16)
Pfam (PF17144)
Pfam (PF14204)
Nicotiana tabacum (common tobacco)
70SB
(j3)
50S ribosomal protein L22, chloroplasticpolymer17520136.21UniProt (A0A1S4CCH0)
Pfam (PF00237)
Nicotiana tabacum (common tobacco)
71TB
(k3)
60S ribosomal protein L23apolymer15417321.51UniProt (Q07761)
Pfam (PF03939)
Pfam (PF00276)
Nicotiana tabacum (common tobacco)L25
72UB
(m3)
uL24 (60S ribosomal protein L26)polymer14616748.51UniProt (A0A1S4DPM5)
Pfam (PF16906)
Pfam (PF00467)
Nicotiana tabacum (common tobacco)
73VB
(n3)
60S ribosomal protein L35-likepolymer12314352.51UniProt (A0A1S3WY31)
Pfam (PF00831)
Nicotiana tabacum (common tobacco)
74WB
(o3)
uL2 (60S ribosomal protein L8)polymer26028220.71UniProt (A0A1S3XXQ5)
Pfam (PF00181)
Pfam (PF03947)
Nicotiana tabacum (common tobacco)
75XB
(q3)
60S ribosomal protein L7-4-likepolymer24228148.91UniProt (A0A1S4A5Z2)
Pfam (PF08079)
Pfam (PF00327)
Nicotiana tabacum (common tobacco)
76YB
(r3)
uL3 (60S ribosomal protein L3)polymer38944507.21UniProt (A0A1S3ZLI9)
Pfam (PF00297)
Nicotiana tabacum (common tobacco)
77ZB
(s3)
uL4 (60S ribosomal protein L4)polymer40544706.91UniProt (A0A1S3X0M5)
Pfam (PF00573)
Pfam (PF14374)
Nicotiana tabacum (common tobacco)
78AC
(t3)
uL5 (60S ribosomal protein L11)polymer18120794.21UniProt (A0A1S3XAW1)
Pfam (PF00673)
Pfam (PF00281)
Nicotiana tabacum (common tobacco)
79BC
(u3)
uL6 (60S ribosomal protein L9)polymer19422057.61UniProt (A0A1S4C068)
Pfam (PF00347)
Nicotiana tabacum (common tobacco)
80CC
(l3)
nascent chainpolymer242060.51Nicotiana tabacum
81DC
(A3)
25S rRNApolymer33901098268.01Nicotiana tabacum
82EC
(B3)
5.8S rRNApolymer16352563.31GenBank (1782605526)Nicotiana tabacum (common tobacco)
83AD, AE, AI, AJ, BD...
(h1, r3, A3, B1, C3...)
MAGNESIUM IONnon-polymer24.3135Chemie (MG)
84AF, AG, AH, AL, AM...
(h1, U1, A3, V1, r3...)
POTASSIUM IONnon-polymer39.1141Chemie (K)
85AK, QG
(A3, h1)
SPERMIDINEnon-polymer145.22Chemie (SPD)
86BK, CK, RG, SG, TG
(A3, h1)
SPERMINEnon-polymer202.35Chemie (SPM)
87BH, MH, OH, QH, RH...
(V1, V3, Y3, Z3, a3...)
ZINC IONnon-polymer65.47Chemie (ZN)
88AO, AP, BO, BP, CO...
(X1, V3, Y1, X3, Z1...)
waterwater18.06792Chemie (HOH)
Sequence modifications
B3: 1 - 163 (GenBank: 1782605526)
PDBExternal DatabaseDetails
U 85C 299conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight3252150.9
Non-Polymers*Number of molecules290
Total formula weight10554.0
All*Total formula weight3262704.9
*Water molecules are not included.

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PDB entries from 2025-07-16

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