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8B2L

Cryo-EM structure of the plant 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A140S ribosomal protein S4polymer26429971.21UniProt (A0A1S4DQ51)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Nicotiana tabacum (common tobacco)
2k140S ribosomal protein S6polymer24928368.31UniProt (A0A1S3Z3Y7)
Pfam (PF01092)
In PDB
Nicotiana tabacum (common tobacco)
3h118S rRNApolymer1808583622.21Nicotiana tabacum
4l140S ribosomal protein S10-1-likepolymer20823121.41UniProt (A0A1S4DHU6)
Pfam (PF03501)
In PDB
Nicotiana tabacum (common tobacco)
5C140S ribosomal protein S12polymer14415190.61UniProt (A0A1S4B129)
Pfam (PF01248)
In PDB
Nicotiana tabacum (common tobacco)
6D140S ribosomal protein S17-likepolymer14916643.31UniProt (A0A1S3Z9G2)
Pfam (PF00833)
In PDB
Nicotiana tabacum (common tobacco)
7E140S ribosomal protein S19-3polymer14316034.41UniProt (A0A1S3Y949)
Pfam (PF01090)
In PDB
Nicotiana tabacum (common tobacco)
8F140S ribosomal protein S3apolymer26129782.61UniProt (Q285L8)
Pfam (PF01015)
In PDB
Nicotiana tabacum (common tobacco)Protein cyc07
9G140S ribosomal protein S21polymer839307.51UniProt (A0A1S4A3T4)
Pfam (PF01249)
In PDB
Nicotiana tabacum (common tobacco)
10H140S ribosomal protein S24polymer13315429.31UniProt (A0A1S3ZXI6)
Pfam (PF01282)
In PDB
Nicotiana tabacum (common tobacco)
11I140S ribosomal protein S25polymer10711795.91UniProt (A0A076L2E2)
Pfam (PF03297)
In PDB
Nicotiana tabacum (common tobacco)
12J140S ribosomal protein S26polymer12714540.11UniProt (A0A1S4CWI7)
Pfam (PF01283)
In PDB
Nicotiana tabacum (common tobacco)
13K140S ribosomal protein S27polymer869613.11UniProt (A0A1S3XJK0)
Pfam (PF01667)
In PDB
Nicotiana tabacum (common tobacco)
14L140S ribosomal protein S28polymer657481.71UniProt (A0A1S4AS05)
Pfam (PF01200)
In PDB
Nicotiana tabacum (common tobacco)
15M140S ribosomal protein S30polymer626953.31UniProt (A0A1S3XGJ0)
Pfam (PF04758)
In PDB
Nicotiana tabacum (common tobacco)
16N1ubiquitin-40S ribosomal protein S27a-likepolymer15617739.71UniProt (A0A1S4C0C1)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Nicotiana tabacum (common tobacco)
17O140S ribosomal protein S7polymer19122121.51UniProt (A0A1S3Z906)
Pfam (PF01251)
In PDB
Nicotiana tabacum (common tobacco)
18P140S ribosomal protein S8polymer22425164.01UniProt (A0A1S4CZK3)
Pfam (PF01201)
In PDB
Nicotiana tabacum (common tobacco)
19Q1guanine nucleotide-binding protein subunit beta-like proteinpolymer32836061.81UniProt (A0A1S4ABX7)
Pfam (PF00400)
In PDB
Nicotiana tabacum (common tobacco)
20R140S ribosomal protein S20-2polymer12213651.91UniProt (A0A1S3XHL0)
Pfam (PF00338)
In PDB
Nicotiana tabacum (common tobacco)
21S140S ribosomal protein S14-2polymer15016375.81UniProt (A0A1S3XAN1)
Pfam (PF00411)
In PDB
Nicotiana tabacum (common tobacco)
22T140S ribosomal protein S23polymer14215771.61UniProt (A0A1S4C879)
Pfam (PF00164)
In PDB
Nicotiana tabacum (common tobacco)
23U140S ribosomal protein S18polymer15217578.51UniProt (A0A1S3YM01)
Pfam (PF00416)
In PDB
Nicotiana tabacum (common tobacco)
24V140S ribosomal protein S29polymer566455.61UniProt (A0A1S4DPT4)
Pfam (PF00253)
In PDB
Nicotiana tabacum (common tobacco)
25W130S ribosomal protein S15, chloroplasticpolymer15117099.31UniProt (A0A1S3ZRI7)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Nicotiana tabacum (common tobacco)
26X140S ribosomal protein S11-likepolymer15917724.81UniProt (A0A1S4BW10)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Nicotiana tabacum (common tobacco)
27Y140S ribosomal protein S15-likepolymer15217274.41UniProt (A0A1S4DFI4)
Pfam (PF00203)
In PDB
Nicotiana tabacum (common tobacco)
28Z140S ribosomal protein SApolymer33635894.11UniProt (A0A1S3Y4M0)
Pfam (PF00318)
In PDB
Nicotiana tabacum (common tobacco)
29a140S ribosomal protein S3-2-likepolymer24827758.51UniProt (A0A1S4BXU2)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Nicotiana tabacum (common tobacco)
30b140S ribosomal protein S9-2-likepolymer19723103.81UniProt (A0A1S4B907)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Nicotiana tabacum (common tobacco)
31c140S ribosomal protein S2-3-likepolymer28030652.71UniProt (A0A1S3XAX8)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Nicotiana tabacum (common tobacco)
32d140S ribosomal protein S5-likepolymer21023373.91UniProt (A0A1S4BXT5)
Pfam (PF00177)
In PDB
Nicotiana tabacum (common tobacco)
33e140S ribosomal protein S15a-1polymer13014815.41UniProt (A0A1S4DBQ8)
Pfam (PF00410)
In PDB
Nicotiana tabacum (common tobacco)40S ribosomal protein S15a-1 isoform X1
34f140S ribosomal protein S16polymer14716731.71UniProt (A0A1S4AU23)
Pfam (PF00380)
In PDB
Nicotiana tabacum (common tobacco)
35B1mRNApolymer123629.01Nicotiana tabacum
36i2, W2tRNApolymer7624571.62GenBank (19120)Nicotiana tabacum (common tobacco)
37C35S rRNApolymer11938328.81GenBank (2276356346)Nicotiana tabacum (common tobacco)
38D360S ribosomal protein L13polymer20623595.51UniProt (A0A1S4CSN1)
Pfam (PF01294)
In PDB
Nicotiana tabacum (common tobacco)
39E360S ribosomal protein L14-1polymer13415443.41UniProt (A0A1S4A807)
Pfam (PF01929)
In PDB
Nicotiana tabacum (common tobacco)
40F3Ribosomal protein L15polymer20424228.31UniProt (A0A1S4D5P7)
Pfam (PF00827)
In PDB
Nicotiana tabacum (common tobacco)
41G360S ribosomal protein L18-2-likepolymer18720905.81UniProt (A0A1S4DF55)
Pfam (PF17135)
In PDB
Nicotiana tabacum (common tobacco)
42H3Ribosomal protein L19polymer21425055.71UniProt (A0A1S3X0I4)
Pfam (PF01280)
In PDB
Nicotiana tabacum (common tobacco)
43I360S ribosomal protein L18apolymer17821513.31UniProt (A0A1S4CP52)
Pfam (PF01775)
In PDB
Nicotiana tabacum (common tobacco)
44J360S ribosomal protein L21-1-likepolymer16418716.91UniProt (A0A1S3XCW6)
Pfam (PF01157)
In PDB
Nicotiana tabacum (common tobacco)
45K360S ribosomal protein L22-2-likepolymer12714277.41UniProt (A0A1S4BSU3)
Pfam (PF01776)
In PDB
Nicotiana tabacum (common tobacco)
46L360S ribosomal protein L24-likepolymer16418606.01UniProt (A0A1S4BHF2)
Pfam (PF01246)
In PDB
Nicotiana tabacum (common tobacco)
47M3eL27 (60S ribosomal protein L27)polymer13515722.71UniProt (A0A1S4AEL0)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Nicotiana tabacum (common tobacco)
48N3eL28 (60S ribosomal protein L28)polymer14315954.61UniProt (A0A1S4D1U6)
Pfam (PF01778)
In PDB
Nicotiana tabacum (common tobacco)
49O360S ribosomal protein L29polymer617132.01UniProt (A0A1S3YR12)
Pfam (PF01779)
In PDB
Nicotiana tabacum (common tobacco)
50P360S ribosomal protein L30-likepolymer11312420.51UniProt (A0A1S3WZ09)
Pfam (PF01248)
In PDB
Nicotiana tabacum (common tobacco)
51Q3eL31 (60S ribosomal protein L31)polymer12013894.21UniProt (A0A1S3Y3V5)
Pfam (PF01198)
In PDB
Nicotiana tabacum (common tobacco)
52R360S ribosomal protein L32-1polymer13315665.51UniProt (A0A1S3Z2X4)
Pfam (PF01655)
In PDB
Nicotiana tabacum (common tobacco)
53S3eL33 (60S ribosomal protein L35a)polymer11212959.21UniProt (A0A1S3XU79)
Pfam (PF01247)
In PDB
Nicotiana tabacum (common tobacco)
54T360S ribosomal protein L34polymer12013788.41UniProt (P41098)
Pfam (PF01199)
In PDB
Nicotiana tabacum (common tobacco)
55U3eL36 (60S ribosomal protein L36)polymer11012361.81UniProt (A0A1S4D2I2)
Pfam (PF01158)
In PDB
Nicotiana tabacum (common tobacco)
56V3Ribosomal protein L37polymer9510879.81UniProt (A0A1S4DN51)
Pfam (PF01907)
In PDB
Nicotiana tabacum (common tobacco)
57W360S ribosomal protein L38polymer698101.71UniProt (A0A1S4C4G8)
Pfam (PF01781)
In PDB
Nicotiana tabacum (common tobacco)
58X360S ribosomal protein L39-3polymer516503.81UniProt (A0A1S3YR32)
Pfam (PF00832)
In PDB
Nicotiana tabacum (common tobacco)
59Y3ubiquitin-60S ribosomal protein L40polymer12814717.41UniProt (A0A1S3X011)
Pfam (PF00240)
Pfam (PF01020)
In PDB
Nicotiana tabacum (common tobacco)
60p360S ribosomal protein L41polymer253445.41UniProt (P62121)
Pfam (PF05162)
In PDB
Nicotiana tabacum (common tobacco)
61Z360S ribosomal protein L44polymer10512037.31UniProt (A0A1S4AVP7)
Pfam (PF00935)
In PDB
Nicotiana tabacum (common tobacco)
62a360S ribosomal protein L37apolymer9210280.11UniProt (A0A1S3X5Y9)
Pfam (PF01780)
In PDB
Nicotiana tabacum (common tobacco)
63b3eL6 (60S ribosomal protein L6)polymer23025536.41UniProt (A0A1S4B0G2)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Nicotiana tabacum (common tobacco)
64c360S ribosomal protein L7apolymer25829432.21UniProt (A0A1S4D668)
Pfam (PF01248)
In PDB
Nicotiana tabacum (common tobacco)
65d3uL13 (60S ribosomal protein L13a)polymer20623525.21UniProt (A0A1S4DN49)
Pfam (PF00572)
In PDB
Nicotiana tabacum (common tobacco)
66e360S ribosomal protein L23polymer14015040.91UniProt (A0A1S3XSQ1)
Pfam (PF00238)
In PDB
Nicotiana tabacum (common tobacco)
67f3uL15 (60S ribosomal protein L27a)polymer14816578.41UniProt (A0A1S4BFD5)
Pfam (PF00828)
In PDB
Nicotiana tabacum (common tobacco)
68g3uL16 (60S ribosomal protein L10)polymer22125012.41UniProt (A0A1S3Z2D7)
Pfam (PF00252)
In PDB
Nicotiana tabacum (common tobacco)
69h360S ribosomal protein L5-likepolymer30134627.31UniProt (A0A1S3XE16)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Nicotiana tabacum (common tobacco)
70j350S ribosomal protein L22, chloroplasticpolymer17520136.21UniProt (A0A1S4CCH0)
Pfam (PF00237)
In PDB
Nicotiana tabacum (common tobacco)
71k360S ribosomal protein L23apolymer15417321.51UniProt (Q07761)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Nicotiana tabacum (common tobacco)L25
72m3uL24 (60S ribosomal protein L26)polymer14616748.51UniProt (A0A1S4DPM5)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Nicotiana tabacum (common tobacco)
73n360S ribosomal protein L35-likepolymer12314352.51UniProt (A0A1S3WY31)
Pfam (PF00831)
In PDB
Nicotiana tabacum (common tobacco)
74o3uL2 (60S ribosomal protein L8)polymer26028220.71UniProt (A0A1S3XXQ5)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Nicotiana tabacum (common tobacco)
75q360S ribosomal protein L7-4-likepolymer24228148.91UniProt (A0A1S4A5Z2)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Nicotiana tabacum (common tobacco)
76r3uL3 (60S ribosomal protein L3)polymer38944507.21UniProt (A0A1S3ZLI9)
Pfam (PF00297)
In PDB
Nicotiana tabacum (common tobacco)
77s3uL4 (60S ribosomal protein L4)polymer40544706.91UniProt (A0A1S3X0M5)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Nicotiana tabacum (common tobacco)
78t3uL5 (60S ribosomal protein L11)polymer18120794.21UniProt (A0A1S3XAW1)
Pfam (PF00673)
Pfam (PF00281)
In PDB
Nicotiana tabacum (common tobacco)
79u3uL6 (60S ribosomal protein L9)polymer19422057.61UniProt (A0A1S4C068)
Pfam (PF00347)
In PDB
Nicotiana tabacum (common tobacco)
80l3nascent chainpolymer242060.51Nicotiana tabacum
81A325S rRNApolymer33901098268.01Nicotiana tabacum
82B35.8S rRNApolymer16352563.31GenBank (1782605526)Nicotiana tabacum (common tobacco)
83h1, r3, A3, B1, C3...MAGNESIUM IONnon-polymer24.3135Chemie (MG)
84h1, U1, A3, V1, r3...POTASSIUM IONnon-polymer39.1141Chemie (K)
85A3, h1SPERMIDINEnon-polymer145.22Chemie (SPD)
86A3, h1SPERMINEnon-polymer202.35Chemie (SPM)
87V1, V3, Y3, Z3, a3...ZINC IONnon-polymer65.47Chemie (ZN)
88waterwater18.06792Chemie (HOH)
Sequence modifications
B3: 1 - 163 (GenBank: 1782605526)
PDBExternal DatabaseDetails
U 85C 299conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight3252150.9
Non-Polymers*Number of molecules290
Total formula weight10554.0
All*Total formula weight3262704.9
*Water molecules are not included.

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PDB entries from 2024-07-17

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