Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A1 | 40S ribosomal protein S4 | polymer | 264 | 29971.2 | 1 | UniProt (A0A1S4DQ51) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Nicotiana tabacum (common tobacco) | |
2 | k1 | 40S ribosomal protein S6 | polymer | 249 | 28368.3 | 1 | UniProt (A0A1S3Z3Y7) Pfam (PF01092) In PDB | Nicotiana tabacum (common tobacco) | |
3 | h1 | 18S rRNA | polymer | 1808 | 583622.2 | 1 | Nicotiana tabacum | ||
4 | l1 | 40S ribosomal protein S10-1-like | polymer | 208 | 23121.4 | 1 | UniProt (A0A1S4DHU6) Pfam (PF03501) In PDB | Nicotiana tabacum (common tobacco) | |
5 | C1 | 40S ribosomal protein S12 | polymer | 144 | 15190.6 | 1 | UniProt (A0A1S4B129) Pfam (PF01248) In PDB | Nicotiana tabacum (common tobacco) | |
6 | D1 | 40S ribosomal protein S17-like | polymer | 149 | 16643.3 | 1 | UniProt (A0A1S3Z9G2) Pfam (PF00833) In PDB | Nicotiana tabacum (common tobacco) | |
7 | E1 | 40S ribosomal protein S19-3 | polymer | 143 | 16034.4 | 1 | UniProt (A0A1S3Y949) Pfam (PF01090) In PDB | Nicotiana tabacum (common tobacco) | |
8 | F1 | 40S ribosomal protein S3a | polymer | 261 | 29782.6 | 1 | UniProt (Q285L8) Pfam (PF01015) In PDB | Nicotiana tabacum (common tobacco) | Protein cyc07 |
9 | G1 | 40S ribosomal protein S21 | polymer | 83 | 9307.5 | 1 | UniProt (A0A1S4A3T4) Pfam (PF01249) In PDB | Nicotiana tabacum (common tobacco) | |
10 | H1 | 40S ribosomal protein S24 | polymer | 133 | 15429.3 | 1 | UniProt (A0A1S3ZXI6) Pfam (PF01282) In PDB | Nicotiana tabacum (common tobacco) | |
11 | I1 | 40S ribosomal protein S25 | polymer | 107 | 11795.9 | 1 | UniProt (A0A076L2E2) Pfam (PF03297) In PDB | Nicotiana tabacum (common tobacco) | |
12 | J1 | 40S ribosomal protein S26 | polymer | 127 | 14540.1 | 1 | UniProt (A0A1S4CWI7) Pfam (PF01283) In PDB | Nicotiana tabacum (common tobacco) | |
13 | K1 | 40S ribosomal protein S27 | polymer | 86 | 9613.1 | 1 | UniProt (A0A1S3XJK0) Pfam (PF01667) In PDB | Nicotiana tabacum (common tobacco) | |
14 | L1 | 40S ribosomal protein S28 | polymer | 65 | 7481.7 | 1 | UniProt (A0A1S4AS05) Pfam (PF01200) In PDB | Nicotiana tabacum (common tobacco) | |
15 | M1 | 40S ribosomal protein S30 | polymer | 62 | 6953.3 | 1 | UniProt (A0A1S3XGJ0) Pfam (PF04758) In PDB | Nicotiana tabacum (common tobacco) | |
16 | N1 | ubiquitin-40S ribosomal protein S27a-like | polymer | 156 | 17739.7 | 1 | UniProt (A0A1S4C0C1) Pfam (PF00240) Pfam (PF01599) In PDB | Nicotiana tabacum (common tobacco) | |
17 | O1 | 40S ribosomal protein S7 | polymer | 191 | 22121.5 | 1 | UniProt (A0A1S3Z906) Pfam (PF01251) In PDB | Nicotiana tabacum (common tobacco) | |
18 | P1 | 40S ribosomal protein S8 | polymer | 224 | 25164.0 | 1 | UniProt (A0A1S4CZK3) Pfam (PF01201) In PDB | Nicotiana tabacum (common tobacco) | |
19 | Q1 | guanine nucleotide-binding protein subunit beta-like protein | polymer | 328 | 36061.8 | 1 | UniProt (A0A1S4ABX7) Pfam (PF00400) In PDB | Nicotiana tabacum (common tobacco) | |
20 | R1 | 40S ribosomal protein S20-2 | polymer | 122 | 13651.9 | 1 | UniProt (A0A1S3XHL0) Pfam (PF00338) In PDB | Nicotiana tabacum (common tobacco) | |
21 | S1 | 40S ribosomal protein S14-2 | polymer | 150 | 16375.8 | 1 | UniProt (A0A1S3XAN1) Pfam (PF00411) In PDB | Nicotiana tabacum (common tobacco) | |
22 | T1 | 40S ribosomal protein S23 | polymer | 142 | 15771.6 | 1 | UniProt (A0A1S4C879) Pfam (PF00164) In PDB | Nicotiana tabacum (common tobacco) | |
23 | U1 | 40S ribosomal protein S18 | polymer | 152 | 17578.5 | 1 | UniProt (A0A1S3YM01) Pfam (PF00416) In PDB | Nicotiana tabacum (common tobacco) | |
24 | V1 | 40S ribosomal protein S29 | polymer | 56 | 6455.6 | 1 | UniProt (A0A1S4DPT4) Pfam (PF00253) In PDB | Nicotiana tabacum (common tobacco) | |
25 | W1 | 30S ribosomal protein S15, chloroplastic | polymer | 151 | 17099.3 | 1 | UniProt (A0A1S3ZRI7) Pfam (PF08069) Pfam (PF00312) In PDB | Nicotiana tabacum (common tobacco) | |
26 | X1 | 40S ribosomal protein S11-like | polymer | 159 | 17724.8 | 1 | UniProt (A0A1S4BW10) Pfam (PF16205) Pfam (PF00366) In PDB | Nicotiana tabacum (common tobacco) | |
27 | Y1 | 40S ribosomal protein S15-like | polymer | 152 | 17274.4 | 1 | UniProt (A0A1S4DFI4) Pfam (PF00203) In PDB | Nicotiana tabacum (common tobacco) | |
28 | Z1 | 40S ribosomal protein SA | polymer | 336 | 35894.1 | 1 | UniProt (A0A1S3Y4M0) Pfam (PF00318) In PDB | Nicotiana tabacum (common tobacco) | |
29 | a1 | 40S ribosomal protein S3-2-like | polymer | 248 | 27758.5 | 1 | UniProt (A0A1S4BXU2) Pfam (PF07650) Pfam (PF00189) In PDB | Nicotiana tabacum (common tobacco) | |
30 | b1 | 40S ribosomal protein S9-2-like | polymer | 197 | 23103.8 | 1 | UniProt (A0A1S4B907) Pfam (PF00163) Pfam (PF01479) In PDB | Nicotiana tabacum (common tobacco) | |
31 | c1 | 40S ribosomal protein S2-3-like | polymer | 280 | 30652.7 | 1 | UniProt (A0A1S3XAX8) Pfam (PF00333) Pfam (PF03719) In PDB | Nicotiana tabacum (common tobacco) | |
32 | d1 | 40S ribosomal protein S5-like | polymer | 210 | 23373.9 | 1 | UniProt (A0A1S4BXT5) Pfam (PF00177) In PDB | Nicotiana tabacum (common tobacco) | |
33 | e1 | 40S ribosomal protein S15a-1 | polymer | 130 | 14815.4 | 1 | UniProt (A0A1S4DBQ8) Pfam (PF00410) In PDB | Nicotiana tabacum (common tobacco) | 40S ribosomal protein S15a-1 isoform X1 |
34 | f1 | 40S ribosomal protein S16 | polymer | 147 | 16731.7 | 1 | UniProt (A0A1S4AU23) Pfam (PF00380) In PDB | Nicotiana tabacum (common tobacco) | |
35 | B1 | mRNA | polymer | 12 | 3629.0 | 1 | Nicotiana tabacum | ||
36 | i2, W2 | tRNA | polymer | 76 | 24571.6 | 2 | GenBank (19120) | Nicotiana tabacum (common tobacco) | |
37 | C3 | 5S rRNA | polymer | 119 | 38328.8 | 1 | GenBank (2276356346) | Nicotiana tabacum (common tobacco) | |
38 | D3 | 60S ribosomal protein L13 | polymer | 206 | 23595.5 | 1 | UniProt (A0A1S4CSN1) Pfam (PF01294) In PDB | Nicotiana tabacum (common tobacco) | |
39 | E3 | 60S ribosomal protein L14-1 | polymer | 134 | 15443.4 | 1 | UniProt (A0A1S4A807) Pfam (PF01929) In PDB | Nicotiana tabacum (common tobacco) | |
40 | F3 | Ribosomal protein L15 | polymer | 204 | 24228.3 | 1 | UniProt (A0A1S4D5P7) Pfam (PF00827) In PDB | Nicotiana tabacum (common tobacco) | |
41 | G3 | 60S ribosomal protein L18-2-like | polymer | 187 | 20905.8 | 1 | UniProt (A0A1S4DF55) Pfam (PF17135) In PDB | Nicotiana tabacum (common tobacco) | |
42 | H3 | Ribosomal protein L19 | polymer | 214 | 25055.7 | 1 | UniProt (A0A1S3X0I4) Pfam (PF01280) In PDB | Nicotiana tabacum (common tobacco) | |
43 | I3 | 60S ribosomal protein L18a | polymer | 178 | 21513.3 | 1 | UniProt (A0A1S4CP52) Pfam (PF01775) In PDB | Nicotiana tabacum (common tobacco) | |
44 | J3 | 60S ribosomal protein L21-1-like | polymer | 164 | 18716.9 | 1 | UniProt (A0A1S3XCW6) Pfam (PF01157) In PDB | Nicotiana tabacum (common tobacco) | |
45 | K3 | 60S ribosomal protein L22-2-like | polymer | 127 | 14277.4 | 1 | UniProt (A0A1S4BSU3) Pfam (PF01776) In PDB | Nicotiana tabacum (common tobacco) | |
46 | L3 | 60S ribosomal protein L24-like | polymer | 164 | 18606.0 | 1 | UniProt (A0A1S4BHF2) Pfam (PF01246) In PDB | Nicotiana tabacum (common tobacco) | |
47 | M3 | eL27 (60S ribosomal protein L27) | polymer | 135 | 15722.7 | 1 | UniProt (A0A1S4AEL0) Pfam (PF00467) Pfam (PF01777) In PDB | Nicotiana tabacum (common tobacco) | |
48 | N3 | eL28 (60S ribosomal protein L28) | polymer | 143 | 15954.6 | 1 | UniProt (A0A1S4D1U6) Pfam (PF01778) In PDB | Nicotiana tabacum (common tobacco) | |
49 | O3 | 60S ribosomal protein L29 | polymer | 61 | 7132.0 | 1 | UniProt (A0A1S3YR12) Pfam (PF01779) In PDB | Nicotiana tabacum (common tobacco) | |
50 | P3 | 60S ribosomal protein L30-like | polymer | 113 | 12420.5 | 1 | UniProt (A0A1S3WZ09) Pfam (PF01248) In PDB | Nicotiana tabacum (common tobacco) | |
51 | Q3 | eL31 (60S ribosomal protein L31) | polymer | 120 | 13894.2 | 1 | UniProt (A0A1S3Y3V5) Pfam (PF01198) In PDB | Nicotiana tabacum (common tobacco) | |
52 | R3 | 60S ribosomal protein L32-1 | polymer | 133 | 15665.5 | 1 | UniProt (A0A1S3Z2X4) Pfam (PF01655) In PDB | Nicotiana tabacum (common tobacco) | |
53 | S3 | eL33 (60S ribosomal protein L35a) | polymer | 112 | 12959.2 | 1 | UniProt (A0A1S3XU79) Pfam (PF01247) In PDB | Nicotiana tabacum (common tobacco) | |
54 | T3 | 60S ribosomal protein L34 | polymer | 120 | 13788.4 | 1 | UniProt (P41098) Pfam (PF01199) In PDB | Nicotiana tabacum (common tobacco) | |
55 | U3 | eL36 (60S ribosomal protein L36) | polymer | 110 | 12361.8 | 1 | UniProt (A0A1S4D2I2) Pfam (PF01158) In PDB | Nicotiana tabacum (common tobacco) | |
56 | V3 | Ribosomal protein L37 | polymer | 95 | 10879.8 | 1 | UniProt (A0A1S4DN51) Pfam (PF01907) In PDB | Nicotiana tabacum (common tobacco) | |
57 | W3 | 60S ribosomal protein L38 | polymer | 69 | 8101.7 | 1 | UniProt (A0A1S4C4G8) Pfam (PF01781) In PDB | Nicotiana tabacum (common tobacco) | |
58 | X3 | 60S ribosomal protein L39-3 | polymer | 51 | 6503.8 | 1 | UniProt (A0A1S3YR32) Pfam (PF00832) In PDB | Nicotiana tabacum (common tobacco) | |
59 | Y3 | ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14717.4 | 1 | UniProt (A0A1S3X011) Pfam (PF00240) Pfam (PF01020) In PDB | Nicotiana tabacum (common tobacco) | |
60 | p3 | 60S ribosomal protein L41 | polymer | 25 | 3445.4 | 1 | UniProt (P62121) Pfam (PF05162) In PDB | Nicotiana tabacum (common tobacco) | |
61 | Z3 | 60S ribosomal protein L44 | polymer | 105 | 12037.3 | 1 | UniProt (A0A1S4AVP7) Pfam (PF00935) In PDB | Nicotiana tabacum (common tobacco) | |
62 | a3 | 60S ribosomal protein L37a | polymer | 92 | 10280.1 | 1 | UniProt (A0A1S3X5Y9) Pfam (PF01780) In PDB | Nicotiana tabacum (common tobacco) | |
63 | b3 | eL6 (60S ribosomal protein L6) | polymer | 230 | 25536.4 | 1 | UniProt (A0A1S4B0G2) Pfam (PF03868) Pfam (PF01159) In PDB | Nicotiana tabacum (common tobacco) | |
64 | c3 | 60S ribosomal protein L7a | polymer | 258 | 29432.2 | 1 | UniProt (A0A1S4D668) Pfam (PF01248) In PDB | Nicotiana tabacum (common tobacco) | |
65 | d3 | uL13 (60S ribosomal protein L13a) | polymer | 206 | 23525.2 | 1 | UniProt (A0A1S4DN49) Pfam (PF00572) In PDB | Nicotiana tabacum (common tobacco) | |
66 | e3 | 60S ribosomal protein L23 | polymer | 140 | 15040.9 | 1 | UniProt (A0A1S3XSQ1) Pfam (PF00238) In PDB | Nicotiana tabacum (common tobacco) | |
67 | f3 | uL15 (60S ribosomal protein L27a) | polymer | 148 | 16578.4 | 1 | UniProt (A0A1S4BFD5) Pfam (PF00828) In PDB | Nicotiana tabacum (common tobacco) | |
68 | g3 | uL16 (60S ribosomal protein L10) | polymer | 221 | 25012.4 | 1 | UniProt (A0A1S3Z2D7) Pfam (PF00252) In PDB | Nicotiana tabacum (common tobacco) | |
69 | h3 | 60S ribosomal protein L5-like | polymer | 301 | 34627.3 | 1 | UniProt (A0A1S3XE16) Pfam (PF17144) Pfam (PF14204) In PDB | Nicotiana tabacum (common tobacco) | |
70 | j3 | 50S ribosomal protein L22, chloroplastic | polymer | 175 | 20136.2 | 1 | UniProt (A0A1S4CCH0) Pfam (PF00237) In PDB | Nicotiana tabacum (common tobacco) | |
71 | k3 | 60S ribosomal protein L23a | polymer | 154 | 17321.5 | 1 | UniProt (Q07761) Pfam (PF03939) Pfam (PF00276) In PDB | Nicotiana tabacum (common tobacco) | L25 |
72 | m3 | uL24 (60S ribosomal protein L26) | polymer | 146 | 16748.5 | 1 | UniProt (A0A1S4DPM5) Pfam (PF16906) Pfam (PF00467) In PDB | Nicotiana tabacum (common tobacco) | |
73 | n3 | 60S ribosomal protein L35-like | polymer | 123 | 14352.5 | 1 | UniProt (A0A1S3WY31) Pfam (PF00831) In PDB | Nicotiana tabacum (common tobacco) | |
74 | o3 | uL2 (60S ribosomal protein L8) | polymer | 260 | 28220.7 | 1 | UniProt (A0A1S3XXQ5) Pfam (PF00181) Pfam (PF03947) In PDB | Nicotiana tabacum (common tobacco) | |
75 | q3 | 60S ribosomal protein L7-4-like | polymer | 242 | 28148.9 | 1 | UniProt (A0A1S4A5Z2) Pfam (PF08079) Pfam (PF00327) In PDB | Nicotiana tabacum (common tobacco) | |
76 | r3 | uL3 (60S ribosomal protein L3) | polymer | 389 | 44507.2 | 1 | UniProt (A0A1S3ZLI9) Pfam (PF00297) In PDB | Nicotiana tabacum (common tobacco) | |
77 | s3 | uL4 (60S ribosomal protein L4) | polymer | 405 | 44706.9 | 1 | UniProt (A0A1S3X0M5) Pfam (PF00573) Pfam (PF14374) In PDB | Nicotiana tabacum (common tobacco) | |
78 | t3 | uL5 (60S ribosomal protein L11) | polymer | 181 | 20794.2 | 1 | UniProt (A0A1S3XAW1) Pfam (PF00673) Pfam (PF00281) In PDB | Nicotiana tabacum (common tobacco) | |
79 | u3 | uL6 (60S ribosomal protein L9) | polymer | 194 | 22057.6 | 1 | UniProt (A0A1S4C068) Pfam (PF00347) In PDB | Nicotiana tabacum (common tobacco) | |
80 | l3 | nascent chain | polymer | 24 | 2060.5 | 1 | Nicotiana tabacum | ||
81 | A3 | 25S rRNA | polymer | 3390 | 1098268.0 | 1 | Nicotiana tabacum | ||
82 | B3 | 5.8S rRNA | polymer | 163 | 52563.3 | 1 | GenBank (1782605526) | Nicotiana tabacum (common tobacco) | |
83 | h1, r3, A3, B1, C3... | MAGNESIUM ION | non-polymer | 24.3 | 135 | Chemie (MG) | |||
84 | h1, U1, A3, V1, r3... | POTASSIUM ION | non-polymer | 39.1 | 141 | Chemie (K) | |||
85 | A3, h1 | SPERMIDINE | non-polymer | 145.2 | 2 | Chemie (SPD) | |||
86 | A3, h1 | SPERMINE | non-polymer | 202.3 | 5 | Chemie (SPM) | |||
87 | V1, V3, Y3, Z3, a3... | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
88 | water | water | 18.0 | 6792 | Chemie (HOH) |
Sequence modifications
B3: 1 - 163 (GenBank: 1782605526)
PDB | External Database | Details |
---|---|---|
U 85 | C 299 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 83 |
Total formula weight | 3252150.9 | |
Non-Polymers* | Number of molecules | 290 |
Total formula weight | 10554.0 | |
All* | Total formula weight | 3262704.9 |