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8AZW

Cryo-EM structure of the plant 60S subunit

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(C)
5S rRNApolymer11938328.81GenBank (2276356346)Nicotiana tabacum (common tobacco)
2B
(D)
eL13 (60S ribosomal protein L13)polymer20623595.51UniProt (A0A1S4CSN1)
Pfam (PF01294)
Nicotiana tabacum (common tobacco)60S ribosomal protein L13
3C
(E)
eL14 (60S ribosomal protein L14)polymer13415443.41UniProt (A0A1S4A807)
Pfam (PF01929)
Nicotiana tabacum (common tobacco)60S ribosomal protein L14-1
4D
(F)
eL15 (60S ribosomal protein L15)polymer20424228.31UniProt (A0A1S4D5P7)
Pfam (PF00827)
Nicotiana tabacum (common tobacco)Ribosomal protein L15
5E
(G)
eL18 (60S ribosomal protein L18)polymer18720905.81UniProt (A0A1S4DF55)
Pfam (PF17135)
Nicotiana tabacum (common tobacco)60S ribosomal protein L18-2-like
6F
(H)
eL19 (60S ribosomal protein L19)polymer21425055.71UniProt (A0A1S3X0I4)
Pfam (PF01280)
Nicotiana tabacum (common tobacco)Ribosomal protein L19
7G
(I)
eL20 (60S ribosomal protein L18a)polymer17821513.31UniProt (A0A1S4CP52)
Pfam (PF01775)
Nicotiana tabacum (common tobacco)60S ribosomal protein L18a
8H
(J)
eL21 (60S ribosomal protein L21)polymer16418716.91UniProt (A0A1S3XCW6)
Pfam (PF01157)
Nicotiana tabacum (common tobacco)60S ribosomal protein L21-1-like
9I
(K)
eL22 (60S ribosomal protein L22)polymer12714277.41UniProt (A0A1S4BSU3)
Pfam (PF01776)
Nicotiana tabacum (common tobacco)60S ribosomal protein L22-2-like
10J
(L)
eL24 (60S ribosomal protein L24)polymer16418606.01UniProt (A0A1S4BHF2)
Pfam (PF01246)
Nicotiana tabacum (common tobacco)60S ribosomal protein L24-like
11K
(M)
eL27 (60S ribosomal protein L27)polymer13515722.71UniProt (A0A1S4AEL0)
Pfam (PF00467)
Pfam (PF01777)
Nicotiana tabacum (common tobacco)60S ribosomal protein L27
12L
(N)
eL28 (60S ribosomal protein L28)polymer14315954.61UniProt (A0A1S4D1U6)
Pfam (PF01778)
Nicotiana tabacum (common tobacco)60S ribosomal protein L28-1-like
13M
(O)
eL29 (60S ribosomal protein L29)polymer617132.01UniProt (A0A1S3YR12)
Pfam (PF01779)
Nicotiana tabacum (common tobacco)60S ribosomal protein L29
14N
(P)
eL30 (60S ribosomal protein L30)polymer11312420.51UniProt (A0A1S3WZ09)
Pfam (PF01248)
Nicotiana tabacum (common tobacco)60S ribosomal protein L30-like
15O
(Q)
eL31 (60S ribosomal protein L31)polymer12013894.21UniProt (A0A1S3Y3V5)
Pfam (PF01198)
Nicotiana tabacum (common tobacco)60S ribosomal protein L31
16P
(R)
eL32 (60S ribosomal protein L32)polymer13315665.51UniProt (A0A1S3Z2X4)
Pfam (PF01655)
Nicotiana tabacum (common tobacco)60S ribosomal protein L32-1
17Q
(S)
eL33 (60S ribosomal protein L35a)polymer11212959.21UniProt (A0A1S3XU79)
Pfam (PF01247)
Nicotiana tabacum (common tobacco)60S ribosomal protein L35a-3
18R
(T)
eL34 (60S ribosomal protein L34)polymer12013788.41UniProt (P41098)
Pfam (PF01199)
Nicotiana tabacum (common tobacco)60S ribosomal protein L34
19S
(U)
eL36 (60S ribosomal protein L36)polymer11012361.81UniProt (A0A1S4D2I2)
Pfam (PF01158)
Nicotiana tabacum (common tobacco)60S ribosomal protein L36
20T
(V)
eL37 (60S ribosomal protein L37)polymer9510879.81UniProt (A0A1S4DN51)
Pfam (PF01907)
Nicotiana tabacum (common tobacco)Ribosomal protein L37
21U
(W)
eL38 (60S ribosomal protein L38)polymer698101.71UniProt (A0A1S4C4G8)
Pfam (PF01781)
Nicotiana tabacum (common tobacco)60S ribosomal protein L38
22V
(X)
eL39 (60S ribosomal protein L39)polymer516503.81UniProt (A0A1S3YR32)
Pfam (PF00832)
Nicotiana tabacum (common tobacco)60S ribosomal protein L39-3
23W
(Y)
eL40 (60S ribosomal protein L40)polymer12814717.41Nicotiana tabacum (common tobacco)60S ribosomal protein L40
24X
(p)
eL41 (60S ribosomal protein L41)polymer253445.41UniProt (P62121)
Pfam (PF05162)
Nicotiana tabacum (common tobacco)60S ribosomal protein L41
25Y
(Z)
eL42 (60S ribosomal protein L42)polymer10512037.31UniProt (A0A1S4AVP7)
Pfam (PF00935)
Nicotiana tabacum (common tobacco)60S ribosomal protein L44
26Z
(a)
eL43 (60S ribosomal protein L37a)polymer9210280.11UniProt (A0A1S3X5Y9)
Pfam (PF01780)
Nicotiana tabacum (common tobacco)60S ribosomal protein L37a
27AA
(b)
eL6 (60S ribosomal protein L6)polymer23025536.41UniProt (A0A1S4B0G2)
Pfam (PF03868)
Pfam (PF01159)
Nicotiana tabacum (common tobacco)60S ribosomal protein L6-like isoform X1
28BA
(c)
eL8 (60S ribosomal protein L7a)polymer25829432.21UniProt (A0A1S4D668)
Pfam (PF01248)
Nicotiana tabacum (common tobacco)60S ribosomal protein L7a
29CA
(d)
uL13 (60S ribosomal protein L13a)polymer20623525.21UniProt (A0A1S4DN49)
Pfam (PF00572)
Nicotiana tabacum (common tobacco)60S ribosomal protein L13a-4
30DA
(e)
uL14 (60S ribosomal protein L23)polymer14015040.91UniProt (A0A1S3XSQ1)
Pfam (PF00238)
Nicotiana tabacum (common tobacco)60S ribosomal protein L23
31EA
(f)
uL15 (60S ribosomal protein L27a)polymer14816578.41UniProt (A0A1S4BFD5)
Pfam (PF00828)
Nicotiana tabacum (common tobacco)60S ribosomal protein L27a-3-like
32FA
(g)
uL16 (60S ribosomal protein L10)polymer22125012.41UniProt (A0A1S3Z2D7)
Pfam (PF00252)
Nicotiana tabacum (common tobacco)60S ribosomal protein L10-like
33GA
(h)
uL18 (60S ribosomal protein L5)polymer30134627.31UniProt (A0A1S3XE16)
Pfam (PF17144)
Pfam (PF14204)
Nicotiana tabacum (common tobacco)60S ribosomal protein L5-like
34HA
(j)
uL22 (60S ribosomal protein L17)polymer17520136.21UniProt (A0A1S4CCH0)
Pfam (PF00237)
Nicotiana tabacum (common tobacco)50S ribosomal protein L22, chloroplastic
35IA
(k)
uL23 (60S ribosomal protein L23a)polymer15417321.51UniProt (Q07761)
Pfam (PF03939)
Pfam (PF00276)
Nicotiana tabacum (common tobacco)60S ribosomal protein L23a,L25
36JA
(m)
uL24 (60S ribosomal protein L26)polymer14616748.51UniProt (A0A1S4DPM5)
Pfam (PF16906)
Pfam (PF00467)
Nicotiana tabacum (common tobacco)60S ribosomal protein L26-1-like
37KA
(n)
uL29 (60S ribosomal protein L35)polymer12314352.51UniProt (A0A1S3WY31)
Pfam (PF00831)
Nicotiana tabacum (common tobacco)60S ribosomal protein L35-like
38LA
(o)
uL2 (60S ribosomal protein L8)polymer26028220.71UniProt (A0A1S3XXQ5)
Pfam (PF00181)
Pfam (PF03947)
Nicotiana tabacum (common tobacco)60S ribosomal protein L8-like
39MA
(q)
uL30 (60S ribosomal protein L7)polymer24228148.91UniProt (A0A1S4A5Z2)
Pfam (PF08079)
Pfam (PF00327)
Nicotiana tabacum (common tobacco)60S ribosomal protein L7-4-like
40NA
(r)
uL3 (60S ribosomal protein L3)polymer38944507.21UniProt (A0A1S3ZLI9)
Pfam (PF00297)
Nicotiana tabacum (common tobacco)60S ribosomal protein L3
41OA
(s)
uL4 (60S ribosomal protein L4)polymer40544706.91UniProt (A0A1S3X0M5)
Pfam (PF00573)
Pfam (PF14374)
Nicotiana tabacum (common tobacco)60S ribosomal protein L4-like
42PA
(t)
uL5 (60S ribosomal protein L11)polymer18120794.21UniProt (A0A1S3XAW1)
Pfam (PF00281)
Pfam (PF00673)
Nicotiana tabacum (common tobacco)60S ribosomal protein L11-1
43QA
(u)
uL6 (60S ribosomal protein L9)polymer19422057.61UniProt (A0A1S4C068)
Pfam (PF00347)
Nicotiana tabacum (common tobacco)60S ribosomal protein L9-1-like
44RA
(l)
nascent chainpolymer242060.51Nicotiana tabacum (common tobacco)
45SA
(A)
25S rRNApolymer33901098268.01Nicotiana tabacum (common tobacco)
46TA
(B)
5.8S rRNApolymer16352563.31GenBank (1782605526)Nicotiana tabacum (common tobacco)
47AC, AD, BC, BD, CB...
(A, V, e, j, q...)
MAGNESIUM IONnon-polymer24.360Chemie (MG)
48AB, AE, AF, AG, BE...
(T, A, Z, f, g...)
POTASSIUM IONnon-polymer39.194Chemie (K)
49BB, DB, FB, GB
(V, Y, Z, a)
ZINC IONnon-polymer65.44Chemie (ZN)
50PD
(A)
SPERMIDINEnon-polymer145.21Chemie (SPD)
51QD, RD
(A)
SPERMINEnon-polymer202.32Chemie (SPM)
52AH, AI, BH, BI, CH...
(D, h, F, j, G...)
waterwater18.04406Chemie (HOH)
Sequence modifications
B: 1 - 163 (GenBank: 1782605526)
PDBExternal DatabaseDetails
U 85C 299conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains46
Total formula weight1986174.6
Non-Polymers*Number of molecules161
Total formula weight5945.1
All*Total formula weight1992119.7
*Water molecules are not included.

246905

PDB entries from 2025-12-31

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