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8AUV

Cryo-EM structure of the plant 40S subunit

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
eS4 (40S ribosomal protein S4)polymer26429971.21UniProt (A0A1S4DQ51)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Nicotiana tabacum (common tobacco)40S ribosomal protein S4
2B
(k)
eS6 (40S ribosomal protein S6)polymer24928368.31UniProt (A0A1S3Z3Y7)
Pfam (PF01092)
Nicotiana tabacum (common tobacco)40S ribosomal protein S6
3C
(h)
18S rRNApolymer1808583622.21GenBank (HQ384692)Nicotiana tabacum (common tobacco)
4D
(l)
eS10 (40S ribosomal protein S10)polymer20823121.41UniProt (A0A1S4DHU6)
Pfam (PF03501)
Nicotiana tabacum (common tobacco)
5E
(C)
eS12 (40S ribosomal protein S12)polymer14415190.61UniProt (A0A1S4B129)
Pfam (PF01248)
Nicotiana tabacum (common tobacco)
6F
(D)
eS17 (40S ribosomal protein S17)polymer14916643.31UniProt (A0A1S3Z9G2)
Pfam (PF00833)
Nicotiana tabacum (common tobacco)40S ribosomal protein S10-1-like
7G
(E)
eS19 (40S ribosomal protein S19)polymer14316034.41UniProt (A0A1S3Y949)
Pfam (PF01090)
Nicotiana tabacum (common tobacco)40S ribosomal protein S12
8H
(F)
eS1 (40S ribosomal protein S3a)polymer26129782.61UniProt (Q285L8)
Pfam (PF01015)
Nicotiana tabacum (common tobacco)40S ribosomal protein S17-like
9I
(G)
eS21 (40S ribosomal protein S21)polymer839307.51UniProt (A0A1S4A3T4)
Pfam (PF01249)
Nicotiana tabacum (common tobacco)40S ribosomal protein S19-3
10J
(H)
eS24 (40S ribosomal protein S24)polymer13315429.31UniProt (A0A1S3ZXI6)
Pfam (PF01282)
Nicotiana tabacum (common tobacco)40S ribosomal protein S3a,Protein cyc07
11K
(I)
eS25 (40S ribosomal protein S25)polymer10711795.91UniProt (A0A076L2E2)
Pfam (PF03297)
Nicotiana tabacum (common tobacco)40S ribosomal protein S21
12L
(J)
eS26 (40S ribosomal protein S26)polymer12714540.11UniProt (A0A1S4CWI7)
Pfam (PF01283)
Nicotiana tabacum (common tobacco)40S ribosomal protein S24
13M
(K)
eS27 (40S ribosomal protein S27)polymer869613.11UniProt (A0A1S3XJK0)
Pfam (PF01667)
Nicotiana tabacum (common tobacco)40S ribosomal protein S25
14N
(L)
eS28 (40S ribosomal protein S28)polymer657481.71UniProt (A0A1S4AS05)
Pfam (PF01200)
Nicotiana tabacum (common tobacco)40S ribosomal protein S26
15O
(M)
eS30 (40S ribosomal protein S30)polymer626953.31UniProt (A0A1S3XGJ0)
Pfam (PF04758)
Nicotiana tabacum (common tobacco)40S ribosomal protein S27
16P
(N)
eS31 (ubiquitin-40S ribosomal protein S27a)polymer15617739.71UniProt (A0A1S4C0C1)
Pfam (PF00240)
Pfam (PF01599)
Nicotiana tabacum (common tobacco)40S ribosomal protein S28
17Q
(O)
eS7 (40S ribosomal protein S7)polymer19122121.51UniProt (A0A1S3Z906)
Pfam (PF01251)
Nicotiana tabacum (common tobacco)40S ribosomal protein S30
18R
(P)
eS8 (40S ribosomal protein S8)polymer22425164.01UniProt (A0A1S4CZK3)
Pfam (PF01201)
Nicotiana tabacum (common tobacco)ubiquitin-40S ribosomal protein S27a-like
19S
(Q)
RACK1 (guanine nucleotide-binding protein subunit beta-like protein)polymer32836061.81UniProt (A0A1S4ABX7)
Pfam (PF00400)
Nicotiana tabacum (common tobacco)40S ribosomal protein S7
20T
(R)
uS10 (40S ribosomal protein S20)polymer12213651.91UniProt (A0A1S3XHL0)
Pfam (PF00338)
Nicotiana tabacum (common tobacco)40S ribosomal protein S8
21U
(S)
uS11 (40S ribosomal protein S14)polymer15016375.81UniProt (A0A1S3XAN1)
Pfam (PF00411)
Nicotiana tabacum (common tobacco)guanine nucleotide-binding protein subunit beta-like protein
22V
(T)
uS12 (40S ribosomal protein S23)polymer14215771.61UniProt (A0A1S4C879)
Pfam (PF00164)
Nicotiana tabacum (common tobacco)40S ribosomal protein S20-2
23W
(U)
uS13 (40S ribosomal protein S18)polymer15217578.51UniProt (A0A1S3YM01)
Pfam (PF00416)
Nicotiana tabacum (common tobacco)40S ribosomal protein S14-2
24X
(V)
uS14 (40S ribosomal protein S29)polymer566455.61UniProt (A0A1S4DPT4)
Pfam (PF00253)
Nicotiana tabacum (common tobacco)40S ribosomal protein S23
25Y
(W)
uS15 (40S ribosomal protein S13)polymer15117099.31UniProt (A0A1S3ZRI7)
Pfam (PF08069)
Pfam (PF00312)
Nicotiana tabacum (common tobacco)40S ribosomal protein S18
26Z
(X)
uS17 (40S ribosomal protein S11)polymer15917724.81UniProt (A0A1S4BW10)
Pfam (PF16205)
Pfam (PF00366)
Nicotiana tabacum (common tobacco)40S ribosomal protein S29
27AA
(Y)
uS19 (40S ribosomal protein S15)polymer15217274.41UniProt (A0A1S4DFI4)
Pfam (PF00203)
Nicotiana tabacum (common tobacco)30S ribosomal protein S15, chloroplastic
28BA
(Z)
uS2 (40S ribosomal protein SA)polymer33635894.11UniProt (A0A1S3Y4M0)
Pfam (PF00318)
Nicotiana tabacum (common tobacco)40S ribosomal protein S11-like
29CA
(a)
uS3 (40S ribosomal protein S3)polymer24827758.51UniProt (A0A1S4BXU2)
Pfam (PF07650)
Pfam (PF00189)
Nicotiana tabacum (common tobacco)40S ribosomal protein S15-like
30DA
(b)
uS4 (40S ribosomal protein S9)polymer19723103.81UniProt (A0A1S4B907)
Pfam (PF00163)
Pfam (PF01479)
Nicotiana tabacum (common tobacco)40S ribosomal protein SA
31EA
(c)
uS5 (40S ribosomal protein S2)polymer28030652.71UniProt (A0A1S3XAX8)
Pfam (PF00333)
Pfam (PF03719)
Nicotiana tabacum (common tobacco)40S ribosomal protein S3-2-like
32FA
(d)
uS7 (40S ribosomal protein S5)polymer21023373.91UniProt (A0A1S4BXT5)
Pfam (PF00177)
Nicotiana tabacum (common tobacco)40S ribosomal protein S9-2-like
33GA
(e)
uS8 (40S ribosomal protein S15a)polymer13014815.41UniProt (A0A1S4DBQ8)
Pfam (PF00410)
Nicotiana tabacum (common tobacco)40S ribosomal protein S2-3-like
34HA
(f)
uS9 (40S ribosomal protein S16)polymer14716731.71UniProt (A0A1S4AU23)
Pfam (PF00380)
Nicotiana tabacum (common tobacco)40S ribosomal protein S5-like
35IA
(B)
mRNApolymer123629.01Nicotiana tabacum (common tobacco)40S ribosomal protein S15a-1, 40S ribosomal protein S15a-1 isoform X1
36AB, AC, AD, BB, BC...
(h, U, B, J)
MAGNESIUM IONnon-polymer24.376Chemie (MG)40S ribosomal protein S16
37AE, AF, BE, BF, CE...
(h, S, T, U, V...)
POTASSIUM IONnon-polymer39.147Chemie (K)
38TE
(h)
SPERMIDINEnon-polymer145.21Chemie (SPD)
39UE, VE, WE
(h)
SPERMINEnon-polymer202.33Chemie (SPM)
40EF, YE, ZE
(V, J, N)
ZINC IONnon-polymer65.43Chemie (ZN)
41AG, BG, CG, DG, EG...
(X, Y, Z, a, b...)
waterwater18.02372Chemie (HOH)
Sequence modifications
h: 1 - 19 (PDB: 8AUV)
h: 20 - 1768 (GenBank: HQ384692)
PDBExternal DatabaseDetails
Uy1 603U 584modified residue
B8n 1194U 1175modified residue
4ac 1283C 1264modified residue
h: 1769 - 1808 (PDB: 8AUV)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains35
Total formula weight1216832.9
Non-Polymers*Number of molecules130
Total formula weight4633.3
All*Total formula weight1221466.2
*Water molecules are not included.

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PDB entries from 2026-01-21

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