8APO

Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A1	mtLSU-1	polymer	109	35302.2	1	GenBank (485474616)	Polytomella magna
2	A2	mtLSU-2	polymer	81	26056.6	1	GenBank (485474616)	Polytomella magna
3	A3	mtLSU-3	polymer	207	66621.5	1		Polytomella magna
4	A4	mtLSU-4	polymer	73	23661.3	1		Polytomella magna
5	A5	mtLSU-5	polymer	136	43735.0	1		Polytomella magna
6	A6	mtLSU-6	polymer	109	35225.0	1		Polytomella magna
7	A7	mtLSU-7	polymer	534	171975.0	1		Polytomella magna
8	A8	mtLSU-8	polymer	350	112621.3	1		Polytomella magna
9	A9	mt-5S	polymer	69	22130.1	1		Polytomella magna
10	Aa	uL2m	polymer	306	33873.2	1		Polytomella magna
11	Ab	uL3m	polymer	306	34287.7	1		Polytomella magna
12	Ac	uL4m	polymer	303	33741.5	1		Polytomella magna
13	Ad	uL5m	polymer	193	21894.4	1		Polytomella magna
14	Ae	uL6m	polymer	242	27446.1	1		Polytomella magna
15	Af	uL9m	polymer	56	6163.1	1		Polytomella magna
16	Ah	uL13m	polymer	186	21549.1	1		Polytomella magna
17	Ai	uL14m	polymer	121	13522.1	1		Polytomella magna
18	Aj	uL15m	polymer	206	22826.4	1		Polytomella magna
19	Ak	uL16m	polymer	166	19334.2	1		Polytomella magna
20	Al	bL17m	polymer	173	20047.5	1		Polytomella magna
21	Am	uL18m	polymer	114	12928.1	1		Polytomella magna
22	An	bL19m	polymer	170	19849.0	1		Polytomella magna
23	Ao	bL20m	polymer	117	13695.7	1		Polytomella magna
24	Ap	bL21m	polymer	200	22296.1	1		Polytomella magna
25	Aq	uL22m	polymer	188	21768.0	1		Polytomella magna
26	Ar	uL23m	polymer	155	18235.2	1		Polytomella magna
27	As	bL24m	polymer	115	13088.2	1		Polytomella magna
28	At	bL25m	polymer	253	28550.2	1		Polytomella magna
29	Au	bL27m	polymer	142	16266.6	1		Polytomella magna
30	Av	bL28m	polymer	129	15075.4	1		Polytomella magna
31	Aw	uL29m	polymer	123	14509.6	1		Polytomella magna
32	Ax	uL30m	polymer	176	20863.3	1		Polytomella magna
33	Ay	bL31m	polymer	72	8388.8	1		Polytomella magna
34	Az	bL32m	polymer	59	6690.0	1		Polytomella magna
35	AA	bL33m	polymer	50	5921.2	1		Polytomella magna
36	AB	bL34m	polymer	50	6149.4	1		Polytomella magna
37	AC	bL35m	polymer	139	16673.6	1		Polytomella magna
38	AD	bL36m	polymer	47	5495.7	1		Polytomella magna
39	AE	mL40	polymer	92	10895.4	1		Polytomella magna
40	AF	mL41	polymer	93	10819.6	1		Polytomella magna
41	AG	mL43	polymer	121	14180.3	1		Polytomella magna
42	AH	mL46	polymer	176	20078.2	1		Polytomella magna
43	AI	mL63	polymer	64	7181.4	1		Polytomella magna
44	AJ	mL64	polymer	122	14227.7	1		Polytomella magna
45	AK	mL87	polymer	139	16437.8	1		Polytomella magna
46	AL, AM, AN	mL116	polymer	420	46617.4	3		Polytomella magna
47	AO	mL118	polymer	377	40870.8	1		Polytomella magna
48	Xa	mL120	polymer	199	22283.5	1		Polytomella magna
49	Xb	mL121	polymer	244	27805.8	1		Polytomella magna
50	Xc	mL122	polymer	57	7019.0	1		Polytomella magna
51	Xd	mL123	polymer	413	45953.6	1		Polytomella magna
52	Xe	mL124	polymer	483	52212.2	1		Polytomella magna
53	Xf	mL125	polymer	201	22855.1	1		Polytomella magna
54	Xg	mL126	polymer	410	44063.2	1		Polytomella magna
55	Xh	mL127	polymer	143	16291.1	1		Polytomella magna
56	Xi	mL128	polymer	24	2949.5	1		Polytomella magna
57	Xj	mL129	polymer	71	8260.2	1		Polytomella magna
58	B1	mtSSU-1	polymer	102	32708.3	1	GenBank (485474616)	Polytomella magna
59	B2	mtSSU-2	polymer	210	67696.3	1		Polytomella magna
60	B3	mtSSU-3	polymer	379	122239.4	1	GenBank (485474616)	Polytomella magna
61	B4	mtSSU-4	polymer	337	108517.2	1		Polytomella magna
62	Ba	bS1m	polymer	242	27632.0	1		Polytomella magna
63	Bb	uS2m	polymer	236	26625.8	1		Polytomella magna
64	Bc	uS3m	polymer	279	31442.0	1		Polytomella magna
65	Bd	uS4m	polymer	221	25534.6	1		Polytomella magna
66	Be	uS5m	polymer	228	25956.7	1		Polytomella magna
67	Bf	uS6m	polymer	119	13776.0	1		Polytomella magna
68	Bg	uS7m	polymer	112	12740.0	1		Polytomella magna
69	Bh	uS8m	polymer	374	43012.6	1		Polytomella magna
70	Bi	uS9m	polymer	282	32274.0	1		Polytomella magna
71	Bj	uS10m	polymer	401	45092.2	1		Polytomella magna
72	Bk	uS11m	polymer	116	12426.5	1		Polytomella magna
73	Bl	uS12m	polymer	123	13729.3	1		Polytomella magna
74	Bm	uS13m	polymer	113	12807.9	1		Polytomella magna
75	Bn	uS14m	polymer	118	13921.2	1		Polytomella magna
76	Bo	uS15m	polymer	167	18048.5	1		Polytomella magna
77	Bp	bS16m	polymer	123	14298.4	1		Polytomella magna
78	Bq	uS17m	polymer	130	15002.3	1		Polytomella magna
79	Br	bS18m	polymer	90	10606.4	1		Polytomella magna
80	Bs	bS19m	polymer	92	10384.8	1		Polytomella magna
81	Bt	bS21m	polymer	75	8829.3	1		Polytomella magna
82	Bu	mS23	polymer	167	19393.3	1		Polytomella magna
83	Bv	mS26	polymer	164	19292.0	1		Polytomella magna
84	Bw	mS29	polymer	351	39282.1	1		Polytomella magna
85	Bx	mS31	polymer	621	66912.0	1		Polytomella magna
86	By	mS33	polymer	78	9022.3	1		Polytomella magna
87	Bz	mS34	polymer	119	14053.0	1		Polytomella magna
88	BA	mS35	polymer	176	19588.9	1		Polytomella magna
89	BB	mS37	polymer	84	9493.0	1		Polytomella magna
90	BC	mS38	polymer	31	4004.1	1		Polytomella magna
91	BD	mS45	polymer	270	30779.9	1		Polytomella magna
92	BE	mS106	polymer	171	18552.0	1		Polytomella magna
93	BF	mS107	polymer	370	42316.9	1		Polytomella magna
94	Ya	uS4m-2	polymer	180	20395.1	1		Polytomella magna
95	Yb	mS108	polymer	50	5864.7	1		Polytomella magna
96	Yc	mS109	polymer	159	18395.0	1		Polytomella magna
97	Yd	mS110	polymer	95	11168.0	1		Polytomella magna
98	Ye	uS3m-2	polymer	106	12220.1	1		Polytomella magna
99	Yf	mS111	polymer	150	17507.8	1		Polytomella magna
100	Yg	mS112	polymer	67	7917.3	1		Polytomella magna
101	Yh	mS113	polymer	65	7505.6	1		Polytomella magna
102	Yi	mS114	polymer	132	15271.0	1		Polytomella magna
103	Yj	mS115	polymer	386	40611.5	1		Polytomella magna
104	Yk	mS116	polymer	92	10018.4	1		Polytomella magna
105	Yl	uS7m-2	polymer	84	9622.2	1		Polytomella magna
106	C1	P-site tRNA anticodon loop	polymer	23	7324.4	1		Polytomella magna
107	C2	A-site tRNA anticodon loop	polymer	21	6689.0	1		Polytomella magna
108	C3	mRNA	polymer	8	2551.6	1		Polytomella magna
109	Ub	mL105	polymer	131	15669.8	1		Polytomella magna
110	Ua	Unknown	polymer	32	2813.5	1		Polytomella magna
111	Ud	Unknown	polymer	44	3762.6	1		Polytomella magna
112	Ue	Unknown	polymer	47	4017.9	1		Polytomella magna
113	Uf	Unknown	polymer	73	6230.7	1		Polytomella magna
114	Ug	Unknown	polymer	63	5379.6	1		Polytomella magna
115	Uh	Unknown	polymer	48	4103.0	1		Polytomella magna
116	Ui	Unknown	polymer	26	2230.7	1		Polytomella magna
117	Uj	Unknown	polymer	9	784.0	1		Polytomella magna
118	Uk	Unknown	polymer	23	1975.4	1		Polytomella magna
119	Ul	Unknown	polymer	16	1379.7	1		Polytomella magna
120	Um	Unknown	polymer	11	954.2	1		Polytomella magna
121	A3, A6, B3, A7, B1...	MAGNESIUM ION	non-polymer		24.3	112	Chemie (MG)
122	A7, Ah, B4, AC, B3...	POTASSIUM ION	non-polymer		39.1	30	Chemie (K)
123	AD	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
124	Bw	ADENOSINE-5'-TRIPHOSPHATE	non-polymer		507.2	1	Chemie (ATP)
125		water	water		18.0	504	Chemie (HOH)

Sequence modifications

Xg: 25 - 456 (PDB: 8APO)
Xg: 461 - 492 (PDB: 8APO)
Bo: 1 - 114 (PDB: 8APO)
Bo: 115 - 167 (PDB: 8APO)

Contents of the asymmetric unit

Polymers	Number of chains	122
	Total formula weight	2863048.2
Non-Polymers*	Number of molecules	144
	Total formula weight	4467.7
All*	Total formula weight	2867515.9

*Water molecules are not included.