8APN
Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A1) | mtLSU-1 | polymer | 109 | 35302.2 | 1 | GenBank (485474616) | Polytomella magna | |
| 2 | B (A2) | mtLSU-2 | polymer | 81 | 26056.6 | 1 | GenBank (485474616) | Polytomella magna | |
| 3 | C (A3) | mtLSU-3 | polymer | 207 | 66621.5 | 1 | Polytomella magna | ||
| 4 | D (A4) | mtLSU-4 | polymer | 73 | 23661.3 | 1 | Polytomella magna | ||
| 5 | E (A5) | mtLSU-5 | polymer | 136 | 43735.0 | 1 | Polytomella magna | ||
| 6 | F (A6) | mtLSU-6 | polymer | 109 | 35225.0 | 1 | Polytomella magna | ||
| 7 | G (A7) | mtLSU-7 | polymer | 534 | 171975.0 | 1 | Polytomella magna | ||
| 8 | H (A8) | mtLSU-8 | polymer | 350 | 112621.3 | 1 | Polytomella magna | ||
| 9 | I (A9) | mt-5S | polymer | 69 | 22130.1 | 1 | Polytomella magna | ||
| 10 | J (Aa) | uL2m | polymer | 306 | 33873.2 | 1 | Polytomella magna | ||
| 11 | K (Ab) | uL3m | polymer | 306 | 34287.7 | 1 | Polytomella magna | ||
| 12 | L (Ac) | uL4m | polymer | 303 | 33741.5 | 1 | Polytomella magna | ||
| 13 | M (Ad) | uL5m | polymer | 193 | 21894.4 | 1 | Polytomella magna | ||
| 14 | N (Ae) | uL6m | polymer | 242 | 27446.1 | 1 | Polytomella magna | ||
| 15 | O (Af) | uL9m | polymer | 56 | 6163.1 | 1 | Polytomella magna | ||
| 16 | P (Ah) | uL13m | polymer | 186 | 21549.1 | 1 | Polytomella magna | ||
| 17 | Q (Ai) | Hypothetical protein | polymer | 121 | 13522.1 | 1 | Polytomella magna | ||
| 18 | R (Aj) | uL15m | polymer | 206 | 22826.4 | 1 | Polytomella magna | ||
| 19 | S (Ak) | uL16m | polymer | 166 | 19334.2 | 1 | Polytomella magna | ||
| 20 | T (Al) | bL17m | polymer | 173 | 20047.5 | 1 | Polytomella magna | ||
| 21 | U (Am) | uL18m | polymer | 114 | 12928.1 | 1 | Polytomella magna | ||
| 22 | V (An) | bL19m | polymer | 170 | 19849.0 | 1 | Polytomella magna | ||
| 23 | W (Ao) | bL20m | polymer | 117 | 13695.7 | 1 | Polytomella magna | ||
| 24 | X (Ap) | bL21m | polymer | 200 | 22296.1 | 1 | Polytomella magna | ||
| 25 | Y (Aq) | uL22m | polymer | 188 | 21768.0 | 1 | Polytomella magna | ||
| 26 | Z (Ar) | uL23m | polymer | 155 | 18235.2 | 1 | Polytomella magna | ||
| 27 | AA (As) | bL24m | polymer | 115 | 13088.2 | 1 | Polytomella magna | ||
| 28 | BA (At) | bL25m | polymer | 253 | 28550.2 | 1 | Polytomella magna | ||
| 29 | CA (Au) | bL27m | polymer | 142 | 16266.6 | 1 | Polytomella magna | ||
| 30 | DA (Av) | bL28m | polymer | 129 | 15075.4 | 1 | Polytomella magna | ||
| 31 | EA (Aw) | uL29m | polymer | 123 | 14509.6 | 1 | Polytomella magna | ||
| 32 | FA (Ax) | uL30m | polymer | 176 | 20863.3 | 1 | Polytomella magna | ||
| 33 | GA (Ay) | bL31m | polymer | 72 | 8388.8 | 1 | Polytomella magna | ||
| 34 | HA (Az) | bL32m | polymer | 59 | 6690.0 | 1 | Polytomella magna | ||
| 35 | IA (AA) | bL33m | polymer | 50 | 5921.2 | 1 | Polytomella magna | ||
| 36 | JA (AB) | bL34m | polymer | 50 | 6149.4 | 1 | Polytomella magna | ||
| 37 | KA (AC) | bL35m | polymer | 139 | 16673.6 | 1 | Polytomella magna | ||
| 38 | LA (AD) | bL36m | polymer | 47 | 5495.7 | 1 | Polytomella magna | ||
| 39 | MA (AE) | mL40 | polymer | 92 | 10895.4 | 1 | Polytomella magna | ||
| 40 | NA (AF) | mL41 | polymer | 93 | 10819.6 | 1 | Polytomella magna | ||
| 41 | OA (AG) | mL43 | polymer | 121 | 14180.3 | 1 | Polytomella magna | ||
| 42 | PA (AH) | mL46 | polymer | 176 | 20078.2 | 1 | Polytomella magna | ||
| 43 | QA (AI) | mL63 | polymer | 64 | 7181.4 | 1 | Polytomella magna | ||
| 44 | RA (AJ) | mL64 | polymer | 122 | 14227.7 | 1 | Polytomella magna | ||
| 45 | SA (AK) | mL87 | polymer | 139 | 16437.8 | 1 | Polytomella magna | ||
| 46 | TA (AL) | mL116 | polymer | 394 | 43883.3 | 1 | Polytomella magna | ||
| 47 | UA (AM) | mL116 | polymer | 419 | 46560.3 | 1 | Polytomella magna | ||
| 48 | VA (AN) | mL116 | polymer | 420 | 46617.4 | 1 | Polytomella magna | ||
| 49 | WA (AO) | mL118 | polymer | 377 | 40870.8 | 1 | Polytomella magna | ||
| 50 | XA (Xa) | mL120 | polymer | 199 | 22283.5 | 1 | Polytomella magna | ||
| 51 | YA (Xb) | mL121 | polymer | 244 | 27805.8 | 1 | Polytomella magna | ||
| 52 | ZA (Xc) | mL122 | polymer | 57 | 7019.0 | 1 | Polytomella magna | ||
| 53 | AB (Xd) | mL123 | polymer | 413 | 45953.6 | 1 | Polytomella magna | ||
| 54 | BB (Xe) | mL124 | polymer | 483 | 52212.2 | 1 | Polytomella magna | ||
| 55 | CB (Xf) | mL125 | polymer | 201 | 22855.1 | 1 | Polytomella magna | ||
| 56 | DB (Xg) | mL126 | polymer | 410 | 44063.2 | 1 | Polytomella magna | ||
| 57 | EB (Xh) | mL127 | polymer | 143 | 16291.1 | 1 | Polytomella magna | ||
| 58 | FB (Xi) | mL128 | polymer | 24 | 2949.5 | 1 | Polytomella magna | ||
| 59 | GB (Xj) | mL129 | polymer | 71 | 8260.2 | 1 | Polytomella magna | ||
| 60 | HB (B1) | mtSSU-1 | polymer | 102 | 32708.3 | 1 | GenBank (485474616) | Polytomella magna | |
| 61 | IB (B2) | mtSSU-2 | polymer | 210 | 67696.3 | 1 | Polytomella magna | ||
| 62 | JB (B3) | mtSSU-3 | polymer | 379 | 122239.4 | 1 | GenBank (485474616) | Polytomella magna | |
| 63 | KB (B4) | mtSSU-4 | polymer | 337 | 108517.2 | 1 | Polytomella magna | ||
| 64 | LB (Ba) | bS1m | polymer | 242 | 27632.0 | 1 | Polytomella magna | ||
| 65 | MB (Bb) | uS2m | polymer | 236 | 26625.8 | 1 | Polytomella magna | ||
| 66 | NB (Bc) | uS3m | polymer | 289 | 32378.9 | 1 | Polytomella magna | ||
| 67 | OB (Bd) | uS4m | polymer | 221 | 25534.6 | 1 | Polytomella magna | ||
| 68 | PB (Be) | uS5m | polymer | 228 | 25956.7 | 1 | Polytomella magna | ||
| 69 | QB (Bf) | uS6m | polymer | 119 | 13776.0 | 1 | Polytomella magna | ||
| 70 | RB (Bg) | uS7m | polymer | 112 | 12740.0 | 1 | Polytomella magna | ||
| 71 | SB (Bh) | uS8m | polymer | 374 | 43012.6 | 1 | Polytomella magna | ||
| 72 | TB (Bi) | uS9m | polymer | 282 | 32274.0 | 1 | Polytomella magna | ||
| 73 | UB (Bj) | uS10m | polymer | 401 | 45092.2 | 1 | Polytomella magna | ||
| 74 | VB (Bk) | uS11m | polymer | 116 | 12426.5 | 1 | Polytomella magna | ||
| 75 | WB (Bl) | uS12m | polymer | 123 | 13729.3 | 1 | Polytomella magna | ||
| 76 | XB (Bm) | uS13m | polymer | 113 | 12807.9 | 1 | Polytomella magna | ||
| 77 | YB (Bn) | uS14m | polymer | 118 | 13921.2 | 1 | Polytomella magna | ||
| 78 | ZB (Bo) | uS15m | polymer | 167 | 18048.5 | 1 | Polytomella magna | ||
| 79 | AC (Bp) | bS16m | polymer | 123 | 14298.4 | 1 | Polytomella magna | ||
| 80 | BC (Bq) | uS17m | polymer | 130 | 15002.3 | 1 | Polytomella magna | ||
| 81 | CC (Br) | bS18m | polymer | 90 | 10606.4 | 1 | Polytomella magna | ||
| 82 | DC (Bs) | bS19m | polymer | 92 | 10384.8 | 1 | Polytomella magna | ||
| 83 | EC (Bt) | bS21m | polymer | 75 | 8829.3 | 1 | Polytomella magna | ||
| 84 | FC (Bu) | mS23 | polymer | 167 | 19393.3 | 1 | Polytomella magna | ||
| 85 | GC (Bv) | mS26 | polymer | 164 | 19292.0 | 1 | Polytomella magna | ||
| 86 | HC (Bw) | mS29 | polymer | 349 | 39111.9 | 1 | Polytomella magna | ||
| 87 | IC (Bx) | mS31 | polymer | 621 | 66912.0 | 1 | Polytomella magna | ||
| 88 | JC (By) | mS33 | polymer | 80 | 9192.5 | 1 | Polytomella magna | ||
| 89 | KC (Bz) | mS34 | polymer | 119 | 14053.0 | 1 | Polytomella magna | ||
| 90 | LC (BA) | mS35 | polymer | 176 | 19588.9 | 1 | Polytomella magna | ||
| 91 | MC (BB) | mS37 | polymer | 84 | 9493.0 | 1 | Polytomella magna | ||
| 92 | NC (BC) | mS45 | polymer | 270 | 30779.9 | 1 | Polytomella magna | ||
| 93 | OC (BD) | mS38 | polymer | 31 | 4004.1 | 1 | Polytomella magna | ||
| 94 | PC (BE) | mS106 | polymer | 171 | 18552.0 | 1 | Polytomella magna | ||
| 95 | QC (BF) | mS107 | polymer | 370 | 42316.9 | 1 | Polytomella magna | ||
| 96 | RC (Ya) | uS4m-2 | polymer | 180 | 20395.1 | 1 | Polytomella magna | ||
| 97 | SC (Yb) | mS108 | polymer | 50 | 5864.7 | 1 | Polytomella magna | ||
| 98 | TC (Yc) | mS109 | polymer | 159 | 18395.0 | 1 | Polytomella magna | ||
| 99 | UC (Yd) | mS110 | polymer | 95 | 11168.0 | 1 | Polytomella magna | ||
| 100 | VC (Ye) | uS3m-2 | polymer | 106 | 12220.1 | 1 | Polytomella magna | ||
| 101 | WC (Yf) | mS111 | polymer | 150 | 17507.8 | 1 | Polytomella magna | ||
| 102 | XC (Yg) | mS112 | polymer | 67 | 7917.3 | 1 | Polytomella magna | ||
| 103 | YC (Yh) | mS113 | polymer | 65 | 7505.6 | 1 | Polytomella magna | ||
| 104 | ZC (Yi) | mS114 | polymer | 132 | 15271.0 | 1 | Polytomella magna | ||
| 105 | AD (Yj) | mS115 | polymer | 386 | 40611.5 | 1 | Polytomella magna | ||
| 106 | BD (Yk) | mS116 | polymer | 92 | 10018.4 | 1 | Polytomella magna | ||
| 107 | CD (Yl) | uS7m-2 | polymer | 84 | 9622.2 | 1 | Polytomella magna | ||
| 108 | DD (C1) | P-site tRNA | polymer | 73 | 23344.8 | 1 | Polytomella magna | ||
| 109 | ED (C3) | mRNA | polymer | 4 | 1264.8 | 1 | Polytomella magna | ||
| 110 | FD (Ub) | mL105 | polymer | 130 | 15554.8 | 1 | Polytomella magna | ||
| 111 | GD (Ua) | Unknown | polymer | 32 | 2813.5 | 1 | Polytomella magna | ||
| 112 | HD (Ud) | Unknown | polymer | 43 | 3677.5 | 1 | Polytomella magna | ||
| 113 | ID (Ue) | Unknown | polymer | 47 | 4017.9 | 1 | Polytomella magna | ||
| 114 | JD (Uf) | Unknown | polymer | 73 | 6230.7 | 1 | Polytomella magna | ||
| 115 | KD (Ug) | Unknown | polymer | 63 | 5379.6 | 1 | Polytomella magna | ||
| 116 | LD (Uh) | Unknown | polymer | 48 | 4103.0 | 1 | Polytomella magna | ||
| 117 | MD (Ui) | Unknown | polymer | 26 | 2230.7 | 1 | Polytomella magna | ||
| 118 | ND (Uj) | Unknown | polymer | 9 | 784.0 | 1 | Polytomella magna | ||
| 119 | OD (Uk) | Unknown | polymer | 23 | 1975.4 | 1 | Polytomella magna | ||
| 120 | PD (Ul) | Unknown | polymer | 16 | 1379.7 | 1 | Polytomella magna | ||
| 121 | QD (Um) | Unknown | polymer | 11 | 954.2 | 1 | Polytomella magna | ||
| 122 | AE, AF, AI, BE, BF... (A3, A7, B3, B1, A8...) | MAGNESIUM ION | non-polymer | 24.3 | 112 | Chemie (MG) | |||
| 123 | AG, AH, AJ, BG, BJ... (A7, AC, B4, B3, A3...) | POTASSIUM ION | non-polymer | 39.1 | 31 | Chemie (K) | |||
| 124 | BH (AD) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 125 | FJ (Bw) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 126 | AK, BK, CK, DK, EK... (B4, Be, Bi, Bl, Bm...) | water | water | 18.0 | 504 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 121 |
| Total formula weight | 2869038.6 | |
| Non-Polymers* | Number of molecules | 145 |
| Total formula weight | 4506.8 | |
| All* | Total formula weight | 2873545.3 |
