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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8ANA

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L33polymer556388.61UniProt (A0A3S5YPG8)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli BW25113
2150S ribosomal protein L34polymer465397.51UniProt (A0A8X6EVB8)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli BW25113
3250S ribosomal protein L35polymer657313.01UniProt (A0A8S0FT45)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli BW25113
4350S ribosomal protein L36polymer384377.41UniProt (A0A2X1PTA3)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli BW25113
5450S ribosomal protein L31polymer707887.11UniProt (C3SIV2)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli BW25113
6ADrosocin1polymer192204.61UniProt (B4MNS1)
UniProt (by SIFTS) (P36193)
In PDB		Drosophila melanogaster
7a23S ribosomal RNApolymer2903941463.41Escherichia coli BW25113
8b5S ribosomal RNApolymer12038790.11Escherichia coli BW25113
9c50S ribosomal protein L2polymer27329923.61UniProt (A0A7L6YWH1)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60422)
In PDB		Escherichia coli BW25113
10d50S ribosomal protein L3polymer20922291.61UniProt (C3SQU2)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli BW25113
11e50S ribosomal protein L4polymer20122121.61UniProt (D8A1N0)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli BW25113
12f50S ribosomal protein L5polymer17920333.61UniProt (D6IEK6)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli BW25113
13g50S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli BW25113
14h50S ribosomal protein L9polymer14915789.01UniProt (C3SFP2)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli BW25113
15i50S ribosomal protein L13polymer14216050.61UniProt (A0A656YGQ7)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli BW25113
16j50S ribosomal protein L14polymer12313565.11UniProt (C3SQZ2)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli BW25113
17k50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL15
18l50S ribosomal protein L16polymer13615312.31UniProt (A0A0H3EMH6)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli BW25113
19m50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3JBW6)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli BW25113
20n50S ribosomal protein L18polymer11712794.71UniProt (A0A514EKV0)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli BW25113
21o50S ribosomal protein L19polymer11513159.31UniProt (A0A370V6W8)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli BW25113
22p50S ribosomal protein L20polymer11813528.01UniProt (A0A378BCJ4)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli BW25113
23q50S ribosomal protein L21polymer10311586.41UniProt (A0A0E2L2H1)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli BW25113
24r50S ribosomal protein L22polymer11012253.41UniProt (A0A0F6B7N1)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli BW25113
25s50S ribosomal protein L23polymer10011222.21UniProt (D7Y3D8)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli BW25113
26t50S ribosomal protein L24polymer10411339.31UniProt (S1E9P3)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli BW25113
27u50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL25
28v50S ribosomal protein L27polymer859146.51UniProt (C3SSG7)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli BW25113
29w50S ribosomal protein L28polymer789027.61UniProt (C3SME2)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli BW25113
30x50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL29
31y50S ribosomal protein L30polymer596554.81UniProt (C3SR32)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli BW25113
32z50S ribosomal protein L32polymer576463.41UniProt (A0A657HW13)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli BW25113
333, 4ZINC IONnon-polymer65.42Chemie (ZN)
34A2-acetamido-2-deoxy-alpha-D-galactopyranosenon-polymer221.21Chemie (A2G)
35a, b, c, d, zMAGNESIUM IONnon-polymer24.3216Chemie (MG)
36aSPERMINEnon-polymer202.31Chemie (SPM)
37waterwater18.042Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains32
Total formula weight1352619.3
Non-Polymers*Number of molecules220
Total formula weight5804.2
All*Total formula weight1358423.6
*Water molecules are not included.

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PDB entries from 2024-07-10

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