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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8AKN

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L33polymer556388.61UniProt (A0A3S5YPG8)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli BW25113
2150S ribosomal protein L34polymer465397.51UniProt (A0A8X6EVB8)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli BW25113
3250S ribosomal protein L35polymer657313.01UniProt (A0A8S0FT45)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli BW25113
4350S ribosomal protein L36polymer384377.41UniProt (A0A2X1PTA3)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli BW25113
5450S ribosomal protein L31polymer707887.11UniProt (C3SIV2)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli BW25113
6ADrosocin1polymer192204.61UniProt (B4MNS1)
UniProt (by SIFTS) (P36193)
In PDB		Drosophila melanogaster
7B16S ribosomal RNApolymer1534497348.81Escherichia coli BW25113
8C30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS2
9D30S ribosomal protein S3polymer23326031.31UniProt (A0A3S7D3V3)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli BW25113
10E30S ribosomal protein S4polymer20623514.21UniProt (C3SR62)
Pfam (PF01479)
Pfam (PF00163)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli BW25113
11F30S ribosomal protein S5polymer16717629.41UniProt (A0A5V7D7L3)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli BW25113
12G30S ribosomal protein S6, fully modified isoformpolymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli BW25113
13H30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS7
14I30S ribosomal protein S8polymer13014146.61UniProt (A0A829CDV3)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli BW25113
15J30S ribosomal protein S9polymer13014886.31UniProt (A0A8E2LXD9)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli BW25113
16K30S ribosomal protein S10polymer10311755.61UniProt (C3SQT7)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli BW25113
17L30S ribosomal protein S11polymer12913871.01UniProt (A0A7U9G2M1)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli BW25113
18M30S ribosomal protein S12polymer12413768.21UniProt (A0A0K0HEP7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli BW25113
19N30S ribosomal protein S13polymer11813128.51UniProt (C3SR52)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli BW25113
20O30S ribosomal protein S14polymer10111606.61UniProt (A0A2S8DCV7)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli BW25113
21P30S ribosomal protein S15polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli BW25113
22Q30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS16
23R30S ribosomal protein S17polymer849724.51UniProt (E3GBX2)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli BW25113
24S30S ribosomal protein S18polymer759005.51UniProt (A0A7L6DXG2)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli BW25113
25T30S ribosomal protein S19polymer9210455.41UniProt (A0A829ADD3)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli BW25113
26U30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS20
27V30S ribosomal protein S21polymer718524.01UniProt (E9TH65)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli BW25113
28WPeptide chain release factor RF1polymer36040573.31UniProt (P0A7I0)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Escherichia coli BW25113RF-1
29XPhenylalanine-tRNApolymer7624485.51Escherichia coli BW25113
30YmRNApolymer92801.71Escherichia coli BW25113
31ZIsoleucine-tRNApolymer7624446.51Escherichia coli BW25113
32a23S ribosomal RNApolymer2903941477.41Escherichia coli BW25113
33b5S ribosomal RNApolymer12038790.11Escherichia coli BW25113
34c50S ribosomal protein L2polymer27329923.61UniProt (A0A7L6YWH1)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60422)
In PDB		Escherichia coli BW25113
35d50S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL3
36e50S ribosomal protein L4polymer20122121.61UniProt (D8A1N0)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli BW25113
37f50S ribosomal protein L5polymer17920333.61UniProt (D6IEK6)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli BW25113
38g50S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli BW25113
39h50S ribosomal protein L9polymer14915789.01UniProt (C3SFP2)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli BW25113
40i50S ribosomal protein L13polymer14216050.61UniProt (A0A656YGQ7)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli BW25113
41j50S ribosomal protein L14polymer12313565.11UniProt (C3SQZ2)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli BW25113
42k50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL15
43l50S ribosomal protein L16polymer13615312.31UniProt (A0A0H3EMH6)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli BW25113
44m50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3JBW6)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli BW25113
45n50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL18
46o50S ribosomal protein L19polymer11513159.31UniProt (A0A370V6W8)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli BW25113
47p50S ribosomal protein L20polymer11813528.01UniProt (A0A378BCJ4)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli BW25113
48q50S ribosomal protein L21polymer10311586.41UniProt (A0A0E2L2H1)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli BW25113
49r50S ribosomal protein L22polymer11012253.41UniProt (A0A0F6B7N1)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli BW25113
50s50S ribosomal protein L23polymer10011222.21UniProt (D7Y3D8)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli BW25113
51t50S ribosomal protein L24polymer10411339.31UniProt (S1E9P3)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli BW25113
52u50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL25
53v50S ribosomal protein L27polymer859146.51UniProt (C3SSG7)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli BW25113
54w50S ribosomal protein L28polymer789027.61UniProt (C3SME2)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli BW25113
55x50S ribosomal protein L29polymer637286.51UniProt (C3SQY2)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli BW25113
56y50S ribosomal protein L30polymer596554.81UniProt (C3SR32)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli BW25113
57z50S ribosomal protein L32polymer576463.41UniProt (A0A657HW13)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli BW25113
583, 4ZINC IONnon-polymer65.42Chemie (ZN)
59A2-acetamido-2-deoxy-alpha-D-galactopyranosenon-polymer221.21Chemie (A2G)
60B, a, d, z, b...MAGNESIUM IONnon-polymer24.3305Chemie (MG)
61aSPERMINEnon-polymer202.31Chemie (SPM)
62waterwater18.01754Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2232107.3
Non-Polymers*Number of molecules309
Total formula weight7967.4
All*Total formula weight2240074.6
*Water molecules are not included.

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PDB entries from 2024-07-10

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