8AKN
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (A0A3S5YPG8) Pfam (PF00471) UniProt (by SIFTS) (P0A7N9) | Escherichia coli BW25113 | |
| 2 | B (1) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (A0A8X6EVB8) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5) | Escherichia coli BW25113 | |
| 3 | C (2) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (A0A8S0FT45) Pfam (PF01632) UniProt (by SIFTS) (P0A7Q1) | Escherichia coli BW25113 | |
| 4 | D (3) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A2X1PTA3) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6) | Escherichia coli BW25113 | |
| 5 | E (4) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (C3SIV2) Pfam (PF01197) UniProt (by SIFTS) (P0A7M9) | Escherichia coli BW25113 | |
| 6 | F (A) | Drosocin1 | polymer | 19 | 2204.6 | 1 | UniProt (B4MNS1) UniProt (by SIFTS) (P36193) | Drosophila melanogaster | |
| 7 | G (B) | 16S ribosomal RNA | polymer | 1534 | 497348.8 | 1 | Escherichia coli BW25113 | ||
| 8 | H (C) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli BW25113 | Small ribosomal subunit protein uS2 |
| 9 | I (D) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (A0A3S7D3V3) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3) | Escherichia coli BW25113 | |
| 10 | J (E) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (C3SR62) Pfam (PF01479) Pfam (PF00163) UniProt (by SIFTS) (P0A7V8) | Escherichia coli BW25113 | |
| 11 | K (F) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (A0A5V7D7L3) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P0A7W1) | Escherichia coli BW25113 | |
| 12 | L (G) | 30S ribosomal protein S6, fully modified isoform | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli BW25113 | |
| 13 | M (H) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli BW25113 | Small ribosomal subunit protein uS7 |
| 14 | N (I) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (A0A829CDV3) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) | Escherichia coli BW25113 | |
| 15 | O (J) | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (A0A8E2LXD9) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) | Escherichia coli BW25113 | |
| 16 | P (K) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (C3SQT7) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) | Escherichia coli BW25113 | |
| 17 | Q (L) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (A0A7U9G2M1) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9) | Escherichia coli BW25113 | |
| 18 | R (M) | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (A0A0K0HEP7) Pfam (PF00164) UniProt (by SIFTS) (P0A7S3) | Escherichia coli BW25113 | |
| 19 | S (N) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (C3SR52) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) | Escherichia coli BW25113 | |
| 20 | T (O) | 30S ribosomal protein S14 | polymer | 101 | 11606.6 | 1 | UniProt (A0A2S8DCV7) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) | Escherichia coli BW25113 | |
| 21 | U (P) | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) | Escherichia coli BW25113 | |
| 22 | V (Q) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli BW25113 | Small ribosomal subunit protein bS16 |
| 23 | W (R) | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (E3GBX2) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) | Escherichia coli BW25113 | |
| 24 | X (S) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A7L6DXG2) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) | Escherichia coli BW25113 | |
| 25 | Y (T) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (A0A829ADD3) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) | Escherichia coli BW25113 | |
| 26 | Z (U) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli BW25113 | Small ribosomal subunit protein bS20 |
| 27 | AA (V) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (E9TH65) Pfam (PF01165) UniProt (by SIFTS) (P68679) | Escherichia coli BW25113 | |
| 28 | BA (W) | Peptide chain release factor RF1 | polymer | 360 | 40573.3 | 1 | UniProt (P0A7I0) Pfam (PF03462) Pfam (PF00472) | Escherichia coli BW25113 | RF-1 |
| 29 | CA (X) | Phenylalanine-tRNA | polymer | 76 | 24485.5 | 1 | Escherichia coli BW25113 | ||
| 30 | DA (Y) | mRNA | polymer | 9 | 2801.7 | 1 | Escherichia coli BW25113 | ||
| 31 | EA (Z) | Isoleucine-tRNA | polymer | 76 | 24446.5 | 1 | Escherichia coli BW25113 | ||
| 32 | FA (a) | 23S ribosomal RNA | polymer | 2903 | 941477.4 | 1 | Escherichia coli BW25113 | ||
| 33 | GA (b) | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | Escherichia coli BW25113 | ||
| 34 | HA (c) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (A0A7L6YWH1) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60422) | Escherichia coli BW25113 | |
| 35 | IA (d) | 50S ribosomal protein L3 | polymer | 209 | 22291.6 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli BW25113 | Large ribosomal subunit protein uL3 |
| 36 | JA (e) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (D8A1N0) Pfam (PF00573) UniProt (by SIFTS) (P60723) | Escherichia coli BW25113 | |
| 37 | KA (f) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (D6IEK6) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399) | Escherichia coli BW25113 | |
| 38 | LA (g) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (C3SR17) Pfam (PF00347) UniProt (by SIFTS) (P0AG55) | Escherichia coli BW25113 | |
| 39 | MA (h) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (C3SFP2) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (P0A7R1) | Escherichia coli BW25113 | |
| 40 | NA (i) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (A0A656YGQ7) Pfam (PF00572) UniProt (by SIFTS) (P0AA10) | Escherichia coli BW25113 | |
| 41 | OA (j) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (C3SQZ2) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3) | Escherichia coli BW25113 | |
| 42 | PA (k) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli BW25113 | Large ribosomal subunit protein uL15 |
| 43 | QA (l) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (A0A0H3EMH6) Pfam (PF00252) UniProt (by SIFTS) (P0ADY7) | Escherichia coli BW25113 | |
| 44 | RA (m) | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (A0A1X3JBW6) Pfam (PF01196) UniProt (by SIFTS) (P0AG44) | Escherichia coli BW25113 | |
| 45 | SA (n) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli BW25113 | Large ribosomal subunit protein uL18 |
| 46 | TA (o) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (A0A370V6W8) Pfam (PF01245) UniProt (by SIFTS) (P0A7K6) | Escherichia coli BW25113 | |
| 47 | UA (p) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (A0A378BCJ4) Pfam (PF00453) UniProt (by SIFTS) (P0A7L3) | Escherichia coli BW25113 | |
| 48 | VA (q) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (A0A0E2L2H1) Pfam (PF00829) UniProt (by SIFTS) (P0AG48) | Escherichia coli BW25113 | |
| 49 | WA (r) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (A0A0F6B7N1) Pfam (PF00237) UniProt (by SIFTS) (P61175) | Escherichia coli BW25113 | |
| 50 | XA (s) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (D7Y3D8) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0) | Escherichia coli BW25113 | |
| 51 | YA (t) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (S1E9P3) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624) | Escherichia coli BW25113 | |
| 52 | ZA (u) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli BW25113 | Large ribosomal subunit protein bL25 |
| 53 | AB (v) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (C3SSG7) Pfam (PF01016) UniProt (by SIFTS) (P0A7L8) | Escherichia coli BW25113 | |
| 54 | BB (w) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (C3SME2) Pfam (PF00830) UniProt (by SIFTS) (P0A7M2) | Escherichia coli BW25113 | |
| 55 | CB (x) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (C3SQY2) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) | Escherichia coli BW25113 | |
| 56 | DB (y) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (C3SR32) Pfam (PF00327) UniProt (by SIFTS) (P0AG51) | Escherichia coli BW25113 | |
| 57 | EB (z) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (A0A657HW13) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4) | Escherichia coli BW25113 | |
| 58 | FB, GB (3, 4) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 59 | HB (A) | 2-acetamido-2-deoxy-alpha-D-galactopyranose | non-polymer | 221.2 | 1 | Chemie (A2G) | |||
| 60 | AC, AD, AE, AF, AG... (B, a, d, z, b...) | MAGNESIUM ION | non-polymer | 24.3 | 305 | Chemie (MG) | |||
| 61 | TM (a) | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) | |||
| 62 | AO, BO, CN, CO, DN... (l, m, 0, n, 1...) | water | water | 18.0 | 1754 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 57 |
| Total formula weight | 2232107.3 | |
| Non-Polymers* | Number of molecules | 309 |
| Total formula weight | 7967.4 | |
| All* | Total formula weight | 2240074.6 |
