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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8AJL

Structure of the Ancestral Scaffold Antigen-6 of Coronavirus Spike protein

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(A, C, B)		Spike glycoprotein,Fibritinpolymer1259138993.53UniProt (P0DTC2)
UniProt (P10104)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)		Severe acute respiratory syndrome coronavirusS glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein
2D, E, F, G, H...
(L, M, N, P, Q...)		2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.49In PDB
GlyTouCan (G42666HT)
3AA, AB, BA, BB, CA...
(A, B, C)		2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.245Chemie (NAG)
Sequence modifications
A, C, B: 19 - 1197 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Thr 19Val 16engineered mutation
Cys 20Asn 17engineered mutation
Gly 21Leu 18engineered mutation
Leu 23Thr 20engineered mutation
Ser 24Arg 21engineered mutation
Asn 25Thr 22engineered mutation
Lys 26Gln 23engineered mutation
Ser 27Leu 24engineered mutation
Asn 30Ala 27engineered mutation
Met 31Tyr 28engineered mutation
Gln 33-insertion
Phe 34-insertion
Ser 35Asn 30engineered mutation
Ser 37Phe 32engineered mutation
Arg 38Thr 33engineered mutation
Asp 46Lys 41engineered mutation
Ile 47Val 42engineered mutation
Asp 51Ser 46engineered mutation
Leu 55Ser 50engineered mutation
Tyr 59Leu 54engineered mutation
Asn 64Phe 59engineered mutation
-Trp 64deletion
Arg 69Phe 65engineered mutation
Tyr 70His 66engineered mutation
Leu 71Ala 67engineered mutation
Ser 72Ile 68engineered mutation
Leu 73His 69engineered mutation
Asn 74Val 70engineered mutation
Asp 76Gly 72engineered mutation
Ser 77Thr 73engineered mutation
Asp 78Asn 74engineered mutation
Arg 79Gly 75engineered mutation
Ile 80Thr 76engineered mutation
Val 81Lys 77engineered mutation
Ile 87Val 83engineered mutation
Ile 88Leu 84engineered mutation
Gly 91Asn 87engineered mutation
Ala 98Ser 94engineered mutation
Val 104Ile 100engineered mutation
Ser 112Thr 108engineered mutation
Asn 116Ser 112engineered mutation
Thr 117Lys 113engineered mutation
Ser 118Thr 114engineered mutation
Ala 121Leu 117engineered mutation
Ile 122Leu 118engineered mutation
Met 124Val 120engineered mutation
Ser 127Ala 123engineered mutation
His 129Asn 125engineered mutation
Ile 130Val 126engineered mutation
Arg 133Lys 129engineered mutation
Asn 136Glu 132engineered mutation
Leu 139Phe 135engineered mutation
Asp 141Asn 137engineered mutation
Met 144Phe 140engineered mutation
Phe 145Leu 141engineered mutation
Ala 146Gly 142engineered mutation
Ser 148-insertion
Arg 149-insertion
Pro 150Tyr 144engineered mutation
Thr 151Tyr 145engineered mutation
Gly 152His 146engineered mutation
Gln 153Lys 147engineered mutation
His 154Asn 148engineered mutation
Tyr 155Asn 149engineered mutation
Thr 157Ser 151engineered mutation
-Met 153deletion
-Glu 154deletion
-Ser 155deletion
-Glu 156deletion
-Phe 157deletion
-Arg 158deletion
Ile 159Val 159engineered mutation
Thr 161Ser 161engineered mutation
Asn 162Ser 162engineered mutation
Arg 164Asn 164engineered mutation
Tyr 168Phe 168engineered mutation
Lys 173Gln 173engineered mutation
Ser 174Pro 174engineered mutation
Gln 176Leu 176engineered mutation
Leu 177Met 177engineered mutation
Val 179Leu 179engineered mutation
Ser 180Glu 180engineered mutation
Glu 181Gly 181engineered mutation
Pro 183Gln 183engineered mutation
His 188Asn 188engineered mutation
Val 197Ile 197engineered mutation
Phe 200Tyr 200engineered mutation
Leu 201Phe 201engineered mutation
His 202Lys 202engineered mutation
Val 203Ile 203engineered mutation
Gly 206Lys 206engineered mutation
Tyr 207His 207engineered mutation
Glu 208Thr 208engineered mutation
Asp 211Asn 211engineered mutation
Val 212Leu 212engineered mutation
Ala 213Val 213engineered mutation
Gly 215Asp 215engineered mutation
Ser 218Gln 218engineered mutation
Val 222Ala 222engineered mutation
Lys 224Glu 224engineered mutation
Ile 226Leu 226engineered mutation
Phe 227Val 227engineered mutation
Lys 228Asp 228engineered mutation
Leu 231Ile 231engineered mutation
Asn 237Arg 237engineered mutation
-Gln 239deletion
-Thr 240deletion
-Leu 241deletion
-Leu 242deletion
-Ala 243deletion
-Leu 244deletion
-His 245deletion
Val 240Ser 247engineered mutation
Ile 241Tyr 248engineered mutation
Met 242Leu 249engineered mutation
Met 244-insertion
Phe 245Pro 251engineered mutation
Ser 246Gly 252engineered mutation
Pro 247Asp 253engineered mutation
Thr 248Ser 254engineered mutation
Thr 249Ser 255engineered mutation
Asn 251Gly 257engineered mutation
Gly 253Thr 259engineered mutation
Glu 255Gly 261engineered mutation
Phe 260Tyr 266engineered mutation
Lys 265Gln 271engineered mutation
Thr 267Arg 273engineered mutation
Met 270Leu 276engineered mutation
Phe 273Tyr 279engineered mutation
Asp 274Asn 280engineered mutation
Ser 286Ala 292engineered mutation
Gln 287Leu 293engineered mutation
Leu 293Thr 299engineered mutation
Val 297Leu 303engineered mutation
Asn 301Thr 307engineered mutation
Ser 315Gln 321engineered mutation
Lys 318Glu 324engineered mutation
Glu 319Ser 325engineered mutation
Val 320Ile 326engineered mutation
Thr 340Arg 346engineered mutation
Pro 342Ala 348engineered mutation
Glu 348Asn 354engineered mutation
Thr 350Lys 356engineered mutation
Asp 354Asn 360engineered mutation
Thr 366Ala 372engineered mutation
Ser 387Thr 393engineered mutation
Ser 388Asn 394engineered mutation
Val 396Ile 402engineered mutation
Lys 397Arg 403engineered mutation
Asp 400Glu 406engineered mutation
Val 411Lys 417engineered mutation
Thr 432Ser 438engineered mutation
Ala 433Asn 439engineered mutation
Ala 437Ser 443engineered mutation
Thr 438Lys 444engineered mutation
Ser 439Val 445engineered mutation
Thr 440Gly 446engineered mutation
Tyr 446Leu 452engineered mutation
Ser 449Leu 455engineered mutation
Leu 450Phe 456engineered mutation
His 452Lys 458engineered mutation
Gly 453Ser 459engineered mutation
Lys 454Asn 460engineered mutation
Asn 464Thr 470engineered mutation
Val 465Glu 471engineered mutation
Pro 466Ile 472engineered mutation
Phe 467Tyr 473engineered mutation
Ser 468Gln 474engineered mutation
Pro 469Ala 475engineered mutation
Glu 470Gly 476engineered mutation
Gly 471Ser 477engineered mutation
Lys 472Thr 478engineered mutation
-Asn 481deletion
Thr 475Gly 482engineered mutation
Pro 476Val 483engineered mutation
Pro 477Glu 484engineered mutation
Ala 478Gly 485engineered mutation
Arg 483Phe 490engineered mutation
Asn 486Gln 493engineered mutation
Thr 487Ser 494engineered mutation
Asn 491Gln 498engineered mutation
Val 494Asn 501engineered mutation
Ile 496Val 503engineered mutation
Asn 512His 519engineered mutation
Leu 522Lys 529engineered mutation
Glu 525Asn 532engineered mutation
Gln 530Lys 537engineered mutation
Asp 547Glu 554engineered mutation
Ser 549Asn 556engineered mutation
Arg 551Lys 558engineered mutation
Gln 553Leu 560engineered mutation
Val 562Ile 569engineered mutation
Ser 563Ala 570engineered mutation
Phe 565Thr 572engineered mutation
Ser 568Ala 575engineered mutation
Lys 573Gln 580engineered mutation
Ser 581Thr 588engineered mutation
Ser 599Asn 606engineered mutation
Glu 600Gln 607engineered mutation
Asp 612Glu 619engineered mutation
Thr 615Val 622engineered mutation
Ala 625Thr 632engineered mutation
Val 633Ser 640engineered mutation
Gln 639Arg 646engineered mutation
Ala 651Asn 658engineered mutation
His 668Gln 675engineered mutation
Ala 670-insertion
Ser 671Gln 677engineered mutation
-Asn 679deletion
-Ser 680deletion
-Pro 681deletion
-Arg 682deletion
-Arg 683deletion
Leu 673Ala 684engineered mutation
Thr 676Val 687engineered mutation
Gly 677Ala 688engineered mutation
Gln 678Ser 689engineered mutation
Lys 679Gln 690engineered mutation
Val 682Ile 693engineered mutation
Ile 694Val 705engineered mutation
Thr 700Ser 711engineered mutation
Ser 708Thr 719engineered mutation
Val 715Ile 726engineered mutation
Met 716Leu 727engineered mutation
Ala 721Thr 732engineered mutation
Ser 757Thr 768engineered mutation
Arg 768Gln 779engineered mutation
Met 777Ile 788engineered mutation
Ala 782Pro 793engineered mutation
Thr 802Ser 813engineered mutation
Met 823Ile 834engineered mutation
Glu 828Asp 839engineered mutation
Ser 834Ala 845engineered mutation
Ala 861Gln 872engineered mutation
Ala 864Ser 875engineered mutation
Val 867Leu 878engineered mutation
Ser 868Ala 879engineered mutation
Ala 871Ile 882engineered mutation
Ala 873Ser 884engineered mutation
Gln 911Leu 922engineered mutation
Lys 918Ser 929engineered mutation
Ser 921Gly 932engineered mutation
Gln 922Lys 933engineered mutation
Glu 925Asp 936engineered mutation
Thr 928Ser 939engineered mutation
Thr 929Ser 940engineered mutation
Ser 931Ala 942engineered mutation
Thr 932Ser 943engineered mutation
Ala 1044Ser 1055engineered mutation
Ser 1059Ala 1070engineered mutation
Arg 1062Lys 1073engineered mutation
Glu 1073Asp 1084engineered mutation
Tyr 1077His 1088engineered mutation
Ser 1090His 1101engineered mutation
Ile 1093Val 1104engineered mutation
Ser 1100Glu 1111engineered mutation
Ile 1122Val 1133engineered mutation
Gly 1198-linker
Ser 1199-linker
A, C, B: 1200 - 1226 (UniProt: P10104)
PDBExternal DatabaseDetails
Leu 1221Phe 479engineered mutation
Gly 1227-expression tag
Thr 1228-expression tag
Ser 1229-expression tag
Leu 1230-expression tag
Glu 1231-expression tag
Val 1232-expression tag
Leu 1233-expression tag
Phe 1234-expression tag
Gln 1235-expression tag
Gly 1236-expression tag
Pro 1237-expression tag
Gly 1238-expression tag
His 1239-expression tag
His 1240-expression tag
His 1241-expression tag
His 1242-expression tag
His 1243-expression tag
His 1244-expression tag
His 1245-expression tag
His 1246-expression tag
Ser 1247-expression tag
Ala 1248-expression tag
Trp 1249-expression tag
Ser 1250-expression tag
His 1251-expression tag
Pro 1252-expression tag
Gln 1253-expression tag
Phe 1254-expression tag
Glu 1255-expression tag
Lys 1256-expression tag
Gly 1257-expression tag
Gly 1258-expression tag
Gly 1259-expression tag
Ser 1260-expression tag
Gly 1261-expression tag
Gly 1262-expression tag
Gly 1263-expression tag
Gly 1264-expression tag
Ser 1265-expression tag
Gly 1266-expression tag
Gly 1267-expression tag
Ser 1268-expression tag
Ala 1269-expression tag
Trp 1270-expression tag
Ser 1271-expression tag
His 1272-expression tag
Pro 1273-expression tag
Gln 1274-expression tag
Phe 1275-expression tag
Glu 1276-expression tag
Lys 1277-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight416980.4
BranchedNumber of molecules9
Total formula weight3819.6
Non-Polymers*Number of molecules45
Total formula weight9954.4
All*Total formula weight430754.4
*Water molecules are not included.

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PDB entries from 2026-01-21

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