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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8AJA

Structure of the Ancestral Scaffold Antigen-5 of Coronavirus Spike protein

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(A, B, C)		Spike glycoprotein,Fibritinpolymer1240137212.63UniProt (P0DTC2)
UniProt (P10104)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)		Severe acute respiratory syndrome coronavirusS glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein
2D, E, F, G, H...
(L, M, N, P, Q...)		2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.49In PDB
GlyTouCan (G42666HT)
3AA, BA, CA, DA, EA...
(B, A, C)		2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.239Chemie (NAG)
Sequence modifications
A, B, C: 19 - 1178 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Thr 19Val 16engineered mutation
Cys 20Asn 17engineered mutation
Gly 21Leu 18engineered mutation
Ile 23Thr 20engineered mutation
Ser 24Arg 21engineered mutation
Asn 25Thr 22engineered mutation
Lys 26Gln 23engineered mutation
Thr 27Leu 24engineered mutation
Asn 30-insertion
Met 31-insertion
Asn 32Ala 27engineered mutation
Gln 33Tyr 28engineered mutation
Phe 34Thr 29engineered mutation
Ser 35Asn 30engineered mutation
Ser 37Phe 32engineered mutation
Arg 38Thr 33engineered mutation
Asp 46Lys 41engineered mutation
Ile 47Val 42engineered mutation
Asp 51Ser 46engineered mutation
Leu 55Ser 50engineered mutation
Tyr 59Leu 54engineered mutation
Asn 64Phe 59engineered mutation
Arg 69-insertion
Tyr 70Trp 64engineered mutation
Leu 71Phe 65engineered mutation
Ser 72His 66engineered mutation
Leu 73Ala 67engineered mutation
Asn 74Ile 68engineered mutation
Ala 75His 69engineered mutation
Asp 76Val 70engineered mutation
-Gly 72deletion
-Thr 73deletion
Arg 79Gly 75engineered mutation
Ile 80Thr 76engineered mutation
Val 81Lys 77engineered mutation
Ile 87Val 83engineered mutation
Gly 91Asn 87engineered mutation
Ile 94Val 90engineered mutation
Ala 98Ser 94engineered mutation
Val 104Ile 100engineered mutation
Ser 112Thr 108engineered mutation
Asn 116Ser 112engineered mutation
Thr 117Lys 113engineered mutation
Ser 118Thr 114engineered mutation
Ala 121Leu 117engineered mutation
Ile 122Leu 118engineered mutation
Ser 127Ala 123engineered mutation
His 129Asn 125engineered mutation
Ile 130Val 126engineered mutation
Ile 131Val 127engineered mutation
Asn 136Glu 132engineered mutation
Leu 139Phe 135engineered mutation
Asp 141Asn 137engineered mutation
Met 144Phe 140engineered mutation
Phe 145Leu 141engineered mutation
Thr 146Gly 142engineered mutation
Ser 148Tyr 144engineered mutation
Arg 149Tyr 145engineered mutation
Gly 150His 146engineered mutation
Gln 151Lys 147engineered mutation
His 152Asn 148engineered mutation
Tyr 153Asn 149engineered mutation
Thr 155Ser 151engineered mutation
-Met 153deletion
-Glu 154deletion
-Ser 155deletion
-Glu 156deletion
-Phe 157deletion
-Arg 158deletion
Thr 159Ser 161engineered mutation
Asn 160Ser 162engineered mutation
Arg 162Asn 164engineered mutation
Tyr 166Phe 168engineered mutation
Lys 171Gln 173engineered mutation
Ser 172Pro 174engineered mutation
Gln 174Leu 176engineered mutation
Leu 175Met 177engineered mutation
Val 177Leu 179engineered mutation
Ser 178Glu 180engineered mutation
Glu 179Gly 181engineered mutation
Asn 181Gln 183engineered mutation
His 186Asn 188engineered mutation
Val 195Ile 197engineered mutation
Phe 198Tyr 200engineered mutation
Leu 199Phe 201engineered mutation
His 200Lys 202engineered mutation
Val 201Ile 203engineered mutation
Ala 204Lys 206engineered mutation
Tyr 205His 207engineered mutation
Glu 206Thr 208engineered mutation
Asp 209Asn 211engineered mutation
Ala 211Val 213engineered mutation
Gly 213Asp 215engineered mutation
Ser 216Gln 218engineered mutation
Val 220Ala 222engineered mutation
Lys 222Glu 224engineered mutation
Ile 224Leu 226engineered mutation
Leu 225Val 227engineered mutation
Lys 226Asp 228engineered mutation
Leu 229Ile 231engineered mutation
Ser 235Arg 237engineered mutation
-Gln 239deletion
-Thr 240deletion
-Leu 241deletion
-Leu 242deletion
-Ala 243deletion
-Leu 244deletion
-His 245deletion
Val 238Ser 247engineered mutation
Val 239Tyr 248engineered mutation
Met 240Leu 249engineered mutation
Met 242-insertion
Phe 243Pro 251engineered mutation
Ser 244Gly 252engineered mutation
Pro 245Asp 253engineered mutation
Thr 246Ser 254engineered mutation
Thr 247Ser 255engineered mutation
Asn 249Gly 257engineered mutation
Leu 251Thr 259engineered mutation
Glu 253Gly 261engineered mutation
Ser 254Ala 262engineered mutation
Phe 258Tyr 266engineered mutation
Lys 263Gln 271engineered mutation
Thr 265Arg 273engineered mutation
Met 268Leu 276engineered mutation
Phe 271Tyr 279engineered mutation
Ser 284Ala 292engineered mutation
Gln 285Leu 293engineered mutation
Leu 291Thr 299engineered mutation
Asn 299Thr 307engineered mutation
Ser 313Gln 321engineered mutation
Gln 316Glu 324engineered mutation
Glu 317Ser 325engineered mutation
Val 318Ile 326engineered mutation
Asp 331Gly 339engineered mutation
Lys 332Glu 340engineered mutation
Pro 340Ala 348engineered mutation
Glu 346Asn 354engineered mutation
Thr 348Lys 356engineered mutation
Lys 349Arg 357engineered mutation
Asp 352Asn 360engineered mutation
Thr 358Ser 366engineered mutation
Thr 364Ala 372engineered mutation
Ser 377Thr 385engineered mutation
Ile 380Asn 388engineered mutation
Ser 386Asn 394engineered mutation
Thr 391Ser 399engineered mutation
Leu 393Val 401engineered mutation
Ser 396Gly 404engineered mutation
Ser 397Asp 405engineered mutation
Val 402Ile 410engineered mutation
Val 409Lys 417engineered mutation
Thr 430Ser 438engineered mutation
Ala 431Asn 439engineered mutation
Lys 432Asn 440engineered mutation
Gln 433Leu 441engineered mutation
-Ser 443deletion
-Lys 444deletion
-Val 445deletion
-Gly 446deletion
-Gly 447deletion
Ala 435Asn 448engineered mutation
Gly 436Tyr 449engineered mutation
Tyr 439Leu 452engineered mutation
Ser 442Leu 455engineered mutation
His 443Phe 456engineered mutation
Thr 446Ser 459engineered mutation
Lys 447Asn 460engineered mutation
Leu 455Ile 468engineered mutation
-Thr 470deletion
-Glu 471deletion
-Ile 472deletion
-Tyr 473deletion
-Gln 474deletion
-Ala 475deletion
-Gly 476deletion
-Ser 477deletion
-Thr 478deletion
-Pro 479deletion
-Cys 480deletion
-Asn 481deletion
-Gly 482deletion
Asn 457Val 483engineered mutation
Ser 458Glu 484engineered mutation
Asp 459Gly 485engineered mutation
Glu 460Phe 486engineered mutation
Gly 462Cys 488engineered mutation
Val 463Tyr 489engineered mutation
Arg 464Phe 490engineered mutation
Thr 465Pro 491engineered mutation
Ser 467Gln 493engineered mutation
Thr 468Ser 494engineered mutation
Asp 470Gly 496engineered mutation
Asn 472Gln 498engineered mutation
Asn 474Thr 500engineered mutation
Val 475Asn 501engineered mutation
Pro 476Gly 502engineered mutation
Ile 477Val 503engineered mutation
Glu 478Gly 504engineered mutation
Ala 481Pro 507engineered mutation
Thr 482Tyr 508engineered mutation
Asn 493His 519engineered mutation
Leu 503Lys 529engineered mutation
Gln 506Asn 532engineered mutation
Gln 511Lys 537engineered mutation
Lys 521Thr 547engineered mutation
Asp 528Glu 554engineered mutation
Ser 530Asn 556engineered mutation
Arg 532Lys 558engineered mutation
Gln 534Leu 560engineered mutation
Ser 535Pro 561engineered mutation
Ala 543Ile 569engineered mutation
Ser 544Ala 570engineered mutation
Phe 546Thr 572engineered mutation
Ser 549Ala 575engineered mutation
Ser 562Thr 588engineered mutation
Ala 578Thr 604engineered mutation
Ser 580Asn 606engineered mutation
Glu 581Gln 607engineered mutation
Asp 593Glu 619engineered mutation
Thr 596Val 622engineered mutation
Ala 606Thr 632engineered mutation
Val 614Ser 640engineered mutation
Gln 620Arg 646engineered mutation
Ala 632Asn 658engineered mutation
His 649Gln 675engineered mutation
Ala 651-insertion
Ser 652Gln 677conflict
-Asn 679deletion
-Ser 680deletion
-Pro 681deletion
-Arg 682deletion
-Arg 683deletion
Leu 654Ala 684engineered mutation
Thr 657Val 687engineered mutation
Gly 658Ala 688engineered mutation
Gln 659Ser 689engineered mutation
Lys 660Gln 690engineered mutation
Val 663Ile 693engineered mutation
Ile 675Val 705engineered mutation
Ala 678Ser 708engineered mutation
Ser 689Thr 719engineered mutation
Val 696Ile 726engineered mutation
Met 697Leu 727engineered mutation
Ala 702Thr 732engineered mutation
Gln 717Thr 747engineered mutation
Ile 742Val 772engineered mutation
Met 758Ile 788engineered mutation
Ala 763Pro 793engineered mutation
Thr 783Ser 813engineered mutation
Met 804Ile 834engineered mutation
Glu 809Asp 839engineered mutation
Ser 815Ala 845engineered mutation
Ala 842Gln 872engineered mutation
Ala 845Ser 875engineered mutation
Val 848Leu 878engineered mutation
Ser 849Ala 879engineered mutation
Ala 852Ile 882engineered mutation
Ala 854Ser 884engineered mutation
Gln 892Leu 922engineered mutation
Lys 899Ser 929engineered mutation
Ser 902Gly 932engineered mutation
Gln 903Lys 933engineered mutation
Glu 906Asp 936engineered mutation
Thr 909Ser 939engineered mutation
Thr 910Ser 940engineered mutation
Ser 912Ala 942engineered mutation
Thr 913Ser 943engineered mutation
Ala 1025Ser 1055engineered mutation
Ser 1040Ala 1070engineered mutation
Arg 1043Lys 1073engineered mutation
Glu 1054Asp 1084engineered mutation
Tyr 1058His 1088engineered mutation
Ser 1071His 1101engineered mutation
Ile 1074Val 1104engineered mutation
Ser 1081Glu 1111engineered mutation
Ala 1093Ser 1123engineered mutation
Ile 1103Val 1133engineered mutation
Gly 1179-linker
Ser 1180-linker
A, B, C: 1181 - 1207 (UniProt: P10104)
PDBExternal DatabaseDetails
Leu 1202Phe 479engineered mutation
Gly 1208-expression tag
Thr 1209-expression tag
Ser 1210-expression tag
Leu 1211-expression tag
Glu 1212-expression tag
Val 1213-expression tag
Leu 1214-expression tag
Phe 1215-expression tag
Gln 1216-expression tag
Gly 1217-expression tag
Pro 1218-expression tag
Gly 1219-expression tag
His 1220-expression tag
His 1221-expression tag
His 1222-expression tag
His 1223-expression tag
His 1224-expression tag
His 1225-expression tag
His 1226-expression tag
His 1227-expression tag
Ser 1228-expression tag
Ala 1229-expression tag
Trp 1230-expression tag
Ser 1231-expression tag
His 1232-expression tag
Pro 1233-expression tag
Gln 1234-expression tag
Phe 1235-expression tag
Glu 1236-expression tag
Lys 1237-expression tag
Gly 1238-expression tag
Gly 1239-expression tag
Gly 1240-expression tag
Ser 1241-expression tag
Gly 1242-expression tag
Gly 1243-expression tag
Gly 1244-expression tag
Gly 1245-expression tag
Ser 1246-expression tag
Gly 1247-expression tag
Gly 1248-expression tag
Ser 1249-expression tag
Ala 1250-expression tag
Trp 1251-expression tag
Ser 1252-expression tag
His 1253-expression tag
Pro 1254-expression tag
Gln 1255-expression tag
Phe 1256-expression tag
Glu 1257-expression tag
Lys 1258-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight411637.8
BranchedNumber of molecules9
Total formula weight3819.6
Non-Polymers*Number of molecules39
Total formula weight8627.1
All*Total formula weight424084.5
*Water molecules are not included.

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PDB entries from 2024-11-06

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