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8AGW

Yeast RQC complex in state D

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
2B
(B)
60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
3C
(C)
60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
4D
(D)
60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL18-A,RP28
5E
(E)
60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
6F
(F)
60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (baker's yeast)L18a,Large ribosomal subunit protein eL20-A
7G
(G)
60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL21-A
8H
(H)
60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
9I
(I)
60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
10J
(J)
60S ribosomal protein L24-Apolymer15517661.71UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
11K
(K)
60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
12L
(L)
60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
13M
(M)
60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL27-A
14N
(N)
60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
15O
(O)
60S ribosomal protein L29polymer596691.91UniProt (A0A6A5PWR1)
Pfam (PF01779)
UniProt (by SIFTS) (P05747)
Saccharomyces cerevisiae (baker's yeast)
16P
(P)
60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
17Q
(Q)
60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
18R
(R)
60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL32
19S
(S)
60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
20T
(T)
60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL34-A
21U
(U)
60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein uL29-A
22V
(V)
60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
23W
(W)
60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
24X
(X)
60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL38
25Y
(Y)
60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
26Z
(Z)
Ubiquitin-60S ribosomal protein L40polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
Saccharomyces cerevisiae (baker's yeast)
27AA
(b)
60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
28BA
(c)
60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
29CA
(d)
60S ribosomal protein L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)
Saccharomyces cerevisiae (baker's yeast)L47,Large ribosomal subunit protein eL41-A,YL41
30DA
(f)
25S rRNApolymer33951097086.51Saccharomyces cerevisiae (baker's yeast)
31EA
(h)
5S rRNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae (baker's yeast)
32FA
(i)
5.8S rRNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae (baker's yeast)
33GA
(j)
60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
34HA
(k)
60S ribosomal protein L3polymer38743850.81UniProt (A0A6A5Q627)
Pfam (PF00297)
UniProt (by SIFTS) (P14126)
Saccharomyces cerevisiae (baker's yeast)BJ4_G0035580.mRNA.1.CDS.1,BJ4_G0049970.mRNA.1.CDS.1,EM14S01-3B_G0027500.mRNA.1.CDS.1,HN1_G0038260.mRNA.1.CDS.1,JXXY16_1_G0027670.mRNA.1.CDS.1,XXYS1_4_G0030010.mRNA.1.CDS.1,Y55_G0038280.mRNA.1.CDS.1
35IA
(l)
60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
36JA
(m)
60S ribosomal protein L5polymer29733764.81UniProt (A0A6A5Q0W8)
Pfam (PF17144)
Pfam (PF14204)
UniProt (by SIFTS) (P26321)
Saccharomyces cerevisiae (baker's yeast)BJ4_G0025610.mRNA.1.CDS.1,BJ4_G0054540.mRNA.1.CDS.1,HLJ1_G0022950.mRNA.1.CDS.1,Y55_G0018660.mRNA.1.CDS.1
37KA
(n)
60S ribosomal protein L6-Bpolymer17620024.51UniProt (P05739)
Pfam (PF01159)
Saccharomyces cerevisiae (baker's yeast)L17,Large ribosomal subunit protein eL6-B,RP18,YL16
38LA
(o)
60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
39MA
(p)
60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
40NA
(q)
60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
41OA
(r)
60S ribosomal protein L10polymer22125410.51UniProt (A0A6A5PUZ5)
Pfam (PF00252)
UniProt (by SIFTS) (P41805)
Saccharomyces cerevisiae (baker's yeast)BJ4_G0029950.mRNA.1.CDS.1,BJ4_G0035810.mRNA.1.CDS.1,EM14S01-3B_G0037000.mRNA.1.CDS.1,HLJ1_G0027670.mRNA.1.CDS.1,HLJ1_G0035970.mRNA.1.CDS.1,HN1_G0027430.mRNA.1.CDS.1,JXXY16_1_G0037140.mRNA.1.CDS.1,SX2_G0027370.mRNA.1.CDS.1,XXYS1_4_G0039550.mRNA.1.CDS.1
42PA
(s)
60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae (baker's yeast)L16,Large ribosomal subunit protein uL5-A,RP39,YL22
43QA
(t)
60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL13-A
44RA
(u)
60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL14-A
45SA
(a)
RQC2 isoform 1polymer1038119250.21UniProt (A0A8H4F709)
Pfam (PF05833)
Pfam (PF05670)
Pfam (PF11923)
UniProt (by SIFTS) (Q12532)
Saccharomyces cerevisiae (baker's yeast)
46TA
(e)
E3 ubiquitin-protein ligase listerinpolymer1562180373.01UniProt (Q04781)
Pfam (PF22958)
Pfam (PF22999)
Pfam (PF23009)
Pfam (PF13639)
Saccharomyces cerevisiae (baker's yeast)RING domain mutant killed by rtf1 deletion protein 1,RING-type E3 ubiquitin transferase listerin
47UA
(g)
Eukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
Saccharomyces cerevisiae (baker's yeast)eIF-6
48VA, WA
(x, y)
Ala tRNApolymer7624502.52Saccharomyces cerevisiae
49XA
(z)
60S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
Saccharomyces cerevisiae (baker's yeast)L15,Large ribosomal subunit protein uL11-A,YL23
50YA
(0)
60S acidic ribosomal protein P0polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
Saccharomyces cerevisiae (baker's yeast)A0,L10e,Large ribosomal subunit protein uL10
51ZA
(1)
CAT-tailed nascent peptidepolymer171464.81Saccharomyces cerevisiae
52AB
(w)
60S ribosomal protein L1-Apolymer21724524.81UniProt (P0CX43)
Pfam (PF00687)
Saccharomyces cerevisiae (baker's yeast)L10a,Large ribosomal subunit protein uL1-A
53BB, CB, DB, EB, FB...
(A, C, E, I, R...)
MAGNESIUM IONnon-polymer24.313Chemie (MG)
54GB, IB, JB, KB, LB...
(T, W, Z, b, c...)
ZINC IONnon-polymer65.47Chemie (ZN)
55MB
(f)
SPERMIDINEnon-polymer145.21Chemie (SPD)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2383043.9
Non-Polymers*Number of molecules21
Total formula weight919.1
All*Total formula weight2383963.0
*Water molecules are not included.

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PDB entries from 2024-11-06

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