8AGB
Structure of yeast oligosaccharylransferase complex with lipid-linked oligosaccharide bound
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 | polymer | 718 | 81604.5 | 1 | UniProt (P39007) Pfam (PF02516) Pfam (PF21436) In PDB | Saccharomyces cerevisiae (baker's yeast) | Oligosaccharyl transferase subunit STT3,Staurosporine and temperature sensitivity protein 3 |
2 | B | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST4 | polymer | 65 | 6871.8 | 1 | UniProt (Q99380) Pfam (PF10215) In PDB | Saccharomyces cerevisiae (baker's yeast) | Oligosaccharyl transferase subunit OST4,Oligosaccharyl transferase 4 kDa subunit,OTase 4 kDa subunit |
3 | C | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST5 | polymer | 86 | 9525.1 | 1 | UniProt (Q92316) Pfam (PF05251) In PDB | Saccharomyces cerevisiae (baker's yeast) | Oligosaccharyl transferase subunit OST5,Oligosaccharyl transferase 9.5 kDa subunit,Oligosaccharyl transferase subunit zeta |
4 | D | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 | polymer | 130 | 14712.5 | 1 | UniProt (P46964) Pfam (PF02109) In PDB | Saccharomyces cerevisiae (baker's yeast) | Oligosaccharyl transferase subunit OST2,Oligosaccharyl transferase 16 kDa subunit,Oligosaccharyl transferase subunit epsilon |
5 | E | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 | polymer | 476 | 54116.5 | 1 | UniProt (P41543) Pfam (PF04597) In PDB | Saccharomyces cerevisiae (baker's yeast) | N-linked oligosaccharyl transferase subunit 1,Oligosaccharyl transferase 64 kDa subunit,Oligosaccharyl transferase subunit OST1,Oligosaccharyl transferase subunit alpha |
6 | F | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 | polymer | 285 | 31554.7 | 1 | UniProt (Q02795) Pfam (PF05817) In PDB | Saccharomyces cerevisiae (baker's yeast) | Oligosaccharyl transferase subunit SWP1,Oligosaccharyl transferase subunit delta |
7 | G | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1 | polymer | 430 | 49444.4 | 1 | UniProt (P33767) Pfam (PF03345) In PDB | Saccharomyces cerevisiae (baker's yeast) | Oligosaccharyl transferase subunit WBP1,Oligosaccharyl transferase subunit beta |
8 | H | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 | polymer | 350 | 39518.2 | 1 | UniProt (P48439) Pfam (PF04756) In PDB | Saccharomyces cerevisiae (baker's yeast) | Oligosaccharyl transferase 34 kDa subunit,Oligosaccharyl transferase subunit OST3,Oligosaccharyl transferase subunit gamma |
9 | I | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G46836GH) | |||
10 | J | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
11 | K | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
12 | L | alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose | branched | 1883.7 | 1 | In PDB | |||
13 | A, B, E, G | 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 758.1 | 4 | Chemie (CPL) | |||
14 | A, F | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 2 | Chemie (PTY) | |||
15 | A | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
16 | A | phosphono [(3~{R},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-6,10,14-trienyl] hydrogen phosphate | non-polymer | 452.5 | 1 | Chemie (ELU) | |||
17 | G | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) |
Sequence modifications
B: 1 - 36 (UniProt: Q99380)
F: 2 - 284 (UniProt: Q02795)
PDB | External Database | Details |
---|---|---|
Arg 37 | - | expression tag |
Thr 38 | - | expression tag |
Leu 39 | - | expression tag |
Gln 40 | - | expression tag |
Val 41 | - | expression tag |
Asp 42 | - | expression tag |
Gly 43 | - | expression tag |
Gly 44 | - | expression tag |
Ser 45 | - | expression tag |
Gly 46 | - | expression tag |
Gly 47 | - | expression tag |
Ser 48 | - | expression tag |
Leu 49 | - | expression tag |
Glu 50 | - | expression tag |
Val 51 | - | expression tag |
Leu 52 | - | expression tag |
Phe 53 | - | expression tag |
Gln 54 | - | expression tag |
Gly 55 | - | expression tag |
Pro 56 | - | expression tag |
Thr 57 | - | expression tag |
Glu 58 | - | expression tag |
Thr 59 | - | expression tag |
Ser 60 | - | expression tag |
Gln 61 | - | expression tag |
Val 62 | - | expression tag |
Ala 63 | - | expression tag |
Pro 64 | - | expression tag |
Ala 65 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Thr 285 | - | expression tag |
Ile 286 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 287347.8 | |
Branched | Number of molecules | 4 |
Total formula weight | 4129.7 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 5450.1 | |
All* | Total formula weight | 296927.6 |