8A99
SARS Cov2 Spike in 1-up conformation complex with Fab47
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | SARS-CoV2 spike 1-up conformation in complex with Fab47 | polymer | 1288 | 142395.4 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | R, S, T | Fab47 (Heavy chain variable domain) | polymer | 123 | 13520.1 | 3 | Homo sapiens (human) | ||
| 3 | O, P, Q | Fab47 (Light chain Variable domain) | polymer | 106 | 11398.6 | 3 | Homo sapiens (human) | ||
| 4 | G, H, I, J, K... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 8 | In PDB GlyTouCan (G42666HT) | |||
| 5 | A, C, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 44 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1208 (UniProt: P0DTC2)
A, B, C: 1209 - 1288 (PDB: 8A99)
| PDB | External Database | Details |
|---|---|---|
| Ala 333 | Thr 333 | conflict |
| Gly 682 | Arg 682 | conflict |
| Ser 683 | Arg 683 | conflict |
| Ser 685 | Arg 685 | conflict |
| Pro 899 | Ala 899 | conflict |
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 501942.1 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 3395.2 | |
| Non-Polymers* | Number of molecules | 44 |
| Total formula weight | 9733.2 | |
| All* | Total formula weight | 515070.4 |
