8A57
Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 50S ribosomal protein L28 | polymer | 62 | 7010.4 | 1 | UniProt (P66144) Pfam (PF00830) | Listeria monocytogenes EGD-e | |
| 2 | B (2) | 50S ribosomal protein L29 | polymer | 63 | 7414.5 | 1 | UniProt (P66166) Pfam (PF00831) | Listeria monocytogenes EGD-e | |
| 3 | C (3) | 50S ribosomal protein L30 | polymer | 59 | 6504.8 | 1 | UniProt (Q927M5) Pfam (PF00327) | Listeria monocytogenes EGD-e | |
| 4 | D (4) | 50S ribosomal protein L31 type B | polymer | 81 | 9274.4 | 1 | UniProt (P0A485) Pfam (PF01197) | Listeria monocytogenes EGD-e | |
| 5 | E (5) | 50S ribosomal protein L32-2 | polymer | 57 | 6534.6 | 1 | UniProt (P66207) Pfam (PF01783) | Listeria monocytogenes EGD-e | |
| 6 | F (6) | 50S ribosomal protein L33 1 | polymer | 49 | 6021.0 | 1 | UniProt (P66219) Pfam (PF00471) | Listeria monocytogenes EGD-e | |
| 7 | G (7) | 50S ribosomal protein L34 | polymer | 44 | 5319.5 | 1 | UniProt (P66248) Pfam (PF00468) | Listeria monocytogenes EGD-e | |
| 8 | H (8) | 50S ribosomal protein L35 | polymer | 66 | 7746.4 | 1 | UniProt (P0A491) Pfam (PF01632) | Listeria monocytogenes EGD-e | |
| 9 | I (9) | 50S ribosomal protein L36 | polymer | 37 | 4336.5 | 1 | UniProt (P66290) Pfam (PF00444) | Listeria monocytogenes EGD-e | |
| 10 | J (A) | 23S ribosomal RNA | polymer | 2931 | 950710.4 | 1 | GenBank (523836572) | Listeria monocytogenes EGD-e | |
| 11 | K (B) | 5S ribosomal RNA | polymer | 114 | 36716.7 | 1 | GenBank (1182963193) | Listeria monocytogenes EGD-e | |
| 12 | L (G) | 50S ribosomal protein L2 | polymer | 277 | 30568.4 | 1 | UniProt (P60426) Pfam (PF00181) Pfam (PF03947) | Listeria monocytogenes EGD-e | |
| 13 | M (H) | 50S ribosomal protein L3 | polymer | 209 | 22863.5 | 1 | UniProt (Q8Y440) Pfam (PF00297) | Listeria monocytogenes EGD-e | |
| 14 | N (I) | 50S ribosomal protein L4 | polymer | 207 | 22640.3 | 1 | UniProt (P61055) Pfam (PF00573) | Listeria monocytogenes EGD-e | |
| 15 | O (J) | 50S ribosomal protein L5 | polymer | 179 | 20023.2 | 1 | UniProt (Q927L9) Pfam (PF00281) Pfam (PF00673) | Listeria monocytogenes EGD-e | |
| 16 | P (K) | 50S ribosomal protein L6 | polymer | 178 | 19434.4 | 1 | UniProt (Q8Y444) Pfam (PF00347) | Listeria monocytogenes EGD-e | |
| 17 | Q (M) | 50S ribosomal protein L13 | polymer | 145 | 16227.7 | 1 | UniProt (Q8Y458) Pfam (PF00572) | Listeria monocytogenes EGD-e | |
| 18 | R (N) | 50S ribosomal protein L14 | polymer | 122 | 13248.4 | 1 | UniProt (Q927L7) Pfam (PF00238) | Listeria monocytogenes EGD-e | |
| 19 | S (O) | 50S ribosomal protein L15 | polymer | 146 | 15812.1 | 1 | UniProt (Q8Y447) Pfam (PF00828) | Listeria monocytogenes EGD-e | |
| 20 | T (P) | 50S ribosomal protein L16 | polymer | 144 | 16171.0 | 1 | UniProt (Q927L4) Pfam (PF00252) | Listeria monocytogenes EGD-e | |
| 21 | U (Q) | 50S ribosomal protein L17 | polymer | 135 | 15246.8 | 1 | UniProt (Q8Y450) Pfam (PF01196) | Listeria monocytogenes EGD-e | |
| 22 | V (R) | 50S ribosomal protein L18 | polymer | 119 | 13121.9 | 1 | UniProt (Q8Y445) Pfam (PF00861) | Listeria monocytogenes EGD-e | |
| 23 | W (S) | 50S ribosomal protein L19 | polymer | 114 | 13146.5 | 1 | UniProt (O53083) Pfam (PF01245) | Listeria monocytogenes EGD-e | |
| 24 | X (T) | 50S ribosomal protein L20 | polymer | 119 | 13719.4 | 1 | UniProt (P66103) Pfam (PF00453) | Listeria monocytogenes EGD-e | |
| 25 | Y (U) | 50S ribosomal protein L21 | polymer | 102 | 11234.0 | 1 | UniProt (Q8Y6Y9) Pfam (PF00829) | Listeria monocytogenes EGD-e | |
| 26 | Z (V) | 50S ribosomal protein L22 | polymer | 118 | 12895.9 | 1 | UniProt (Q927L2) Pfam (PF00237) | Listeria monocytogenes EGD-e | |
| 27 | AA (W) | 50S ribosomal protein L23 | polymer | 94 | 10935.7 | 1 | UniProt (Q8Y441) Pfam (PF00276) | Listeria monocytogenes EGD-e | |
| 28 | BA (X) | 50S ribosomal protein L24 | polymer | 103 | 11205.3 | 1 | UniProt (A0A0P6T4V2) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q8Y443) | Listeria monocytogenes EGD-e | |
| 29 | CA (Z) | 50S ribosomal protein L27 | polymer | 96 | 10571.9 | 1 | UniProt (P66125) Pfam (PF01016) | Listeria monocytogenes EGD-e | |
| 30 | DA (D) | GTPase HflX | polymer | 418 | 47610.9 | 1 | UniProt (Q8Y8Y0) Pfam (PF13167) Pfam (PF16360) Pfam (PF01926) | Listeria monocytogenes EGD-e | GTP-binding protein HflX |
| 31 | EA (E) | 50S ribosomal protein L11 | polymer | 141 | 14890.5 | 1 | UniProt (P66054) Pfam (PF03946) Pfam (PF00298) | Listeria monocytogenes EGD-e | |
| 32 | FA, GA (5, 9) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 33 | HA (A) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 34 | AB, AC, AD, AE, AF... (A, G, H, O, D) | MAGNESIUM ION | non-polymer | 24.3 | 160 | Chemie (MG) | |||
| 35 | BG, CG (A) | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 2 | Chemie (PUT) | |||
| 36 | NG (P) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 37 | OG (D) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) |
Sequence modifications
E: 0 - 140 (UniProt: P66054)
| PDB | External Database | Details |
|---|---|---|
| Ile 137 | Thr 138 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 31 |
| Total formula weight | 1399156.9 | |
| Non-Polymers* | Number of molecules | 167 |
| Total formula weight | 4902.5 | |
| All* | Total formula weight | 1404059.4 |
