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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8A22

Structure of the mitochondrial ribosome from Polytomella magna

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A1)		mtLSU-1polymer10935302.21GenBank (485474616)Polytomella magna
2B
(A2)		mtLSU-2polymer8126056.61GenBank (485474616)Polytomella magna
3C
(A3)		mtLSU-3polymer21067578.11GenBank (485474616)Polytomella magna
4D
(A4)		mtLSU-4polymer7323661.31GenBank (485474616)Polytomella magna
5E
(A5)		mtLSU-5polymer14245703.21GenBank (485474616)Polytomella magna
6F
(A6)		mtLSU-6polymer13142369.31GenBank (485474616)Polytomella magna
7G
(A7)		mtLSU-7polymer576185617.31GenBank (485474616)Polytomella magna
8H
(A8)		mtLSU-8polymer350112621.31GenBank (485474616)Polytomella magna
9I
(A9)		mt-5Spolymer6922130.11Polytomella magna
10J
(Aa)		uL2mpolymer30633873.21Polytomella magna
11K
(Ab)		uL3mpolymer30634287.71Polytomella magna
12L
(Ac)		uL4mpolymer30333741.51Polytomella magna
13M
(Ad)		uL5mpolymer19321894.41Polytomella magna
14N
(Ae)		uL6mpolymer24227446.11Polytomella magna
15O
(Af)		uL9mpolymer566163.11Polytomella magna
16P
(Ah)		uL13mpolymer18621549.11Polytomella magna
17Q
(Ai)		uL14mpolymer12113522.11Polytomella magna
18R
(Aj)		uL15mpolymer20622826.41Polytomella magna
19S
(Ak)		uL16mpolymer16619334.21Polytomella magna
20T
(Al)		bL17mpolymer17320047.51Polytomella magna
21U
(Am)		uL18mpolymer11412928.11Polytomella magna
22V
(An)		bL19mpolymer17019849.01Polytomella magna
23W
(Ao)		bL20mpolymer11713695.71Polytomella magna
24X
(Ap)		bL21mpolymer20022296.11Polytomella magna
25Y
(Aq)		uL22mpolymer18821768.01Polytomella magna
26Z
(Ar)		uL23mpolymer15518235.21Polytomella magna
27AA
(As)		bL24mpolymer11513088.21Polytomella magna
28BA
(At)		bL25mpolymer25328550.21Polytomella magna
29CA
(Au)		bL27mpolymer14216266.61Polytomella magna
30DA
(Av)		bL28mpolymer12915075.41Polytomella magna
31EA
(Aw)		uL29mpolymer12314509.61Polytomella magna
32FA
(Ax)		uL30mpolymer17620863.31Polytomella magna
33GA
(Ay)		bL31mpolymer728388.81Polytomella magna
34HA
(Az)		bL31mpolymer596690.01Polytomella magna
35IA
(AA)		bL33mpolymer505921.21Polytomella magna
36JA
(AB)		bL34mpolymer506149.41Polytomella magna
37KA
(AC)		bL35mpolymer13916673.61Polytomella magna
38LA
(AD)		bL36mpolymer475495.71Polytomella magna
39MA
(AE)		mL40polymer9210895.41Polytomella magna
40NA
(AF)		mL41polymer9310819.61Polytomella magna
41OA
(AG)		mL43polymer12114180.31Polytomella magna
42PA
(AH)		mL46polymer17620078.21Polytomella magna
43QA
(AI)		mL63polymer647181.41Polytomella magna
44RA
(AJ)		mL64polymer12214227.71Polytomella magna
45SA
(AK)		mL87polymer13916437.81Polytomella magna
46TA, UA, VA
(AL, AM, AN)		mL116polymer42046617.43Polytomella magna
47WA
(AO)		mL118polymer37740870.81Polytomella magna
48XA
(Xa)		mL120polymer19922283.51Polytomella magna
49YA
(Xb)		mL121polymer24427805.81Polytomella magna
50ZA
(Xc)		mL122polymer577019.01Polytomella magna
51AB
(Xd)		mL123polymer41345953.61Polytomella magna
52BB
(Xe)		mL124polymer48352212.21Polytomella magna
53CB
(Xf)		mL125polymer20122855.11Polytomella magna
54DB
(Xg)		mL126polymer41044063.21Polytomella magna
55EB
(Xh)		mL127polymer14316291.11Polytomella magna
56FB
(Xi)		mL128polymer242949.51Polytomella magna
57GB
(Xj)		mL129polymer718260.21Polytomella magna
58HB
(B1)		mtSSU-1polymer10232708.31GenBank (485474616)Polytomella magna
59IB
(B2)		mtSSU-2polymer21468920.91GenBank (485474616)Polytomella magna
60JB
(B3)		mtSSU-3polymer379122239.41GenBank (485474616)Polytomella magna
61KB
(B4)		mtSSU-4polymer348112061.31GenBank (485474616)Polytomella magna
62LB
(Ba)		bS1mpolymer24227632.01Polytomella magna
63MB
(Bb)		uS2mpolymer23626625.81Polytomella magna
64NB
(Bc)		uS3mpolymer28932378.91Polytomella magna
65OB
(Bd)		uS4mpolymer22125534.61Polytomella magna
66PB
(Be)		uS5mpolymer22825956.71Polytomella magna
67QB
(Bf)		uS6mpolymer11913776.01Polytomella magna
68RB
(Bg)		uS7mpolymer11212740.01Polytomella magna
69SB
(Bh)		uS8mpolymer37443012.61Polytomella magna
70TB
(Bi)		uS9mpolymer28232274.01Polytomella magna
71UB
(Bj)		uS10mpolymer40145092.21Polytomella magna
72VB
(Bk)		uS11mpolymer11612426.51Polytomella magna
73WB
(Bl)		uS12mpolymer12313729.31Polytomella magna
74XB
(Bm)		uS13mpolymer11312807.91Polytomella magna
75YB
(Bn)		uS14mpolymer11813921.21Polytomella magna
76ZB
(Bo)		uS15mpolymer16718048.51Polytomella magna
77AC
(Bp)		bS16mpolymer12314298.41Polytomella magna
78BC
(Bq)		uS17mpolymer13015002.31Polytomella magna
79CC
(Br)		bS18mpolymer9010606.41Polytomella magna
80DC
(Bs)		bS19mpolymer9210384.81Polytomella magna
81EC
(Bt)		bS21mpolymer758829.31Polytomella magna
82FC
(Bu)		mS23polymer16719393.31Polytomella magna
83GC
(Bv)		mS26polymer16419292.01Polytomella magna
84HC
(Bw)		mS29polymer34939111.91Polytomella magna
85IC
(Bx)		mS31polymer62166912.01Polytomella magna
86JC
(By)		mS33polymer809192.51Polytomella magna
87KC
(Bz)		mS34polymer11914053.01Polytomella magna
88LC
(BA)		mS35polymer17619588.91Polytomella magna
89MC
(BB)		mS37polymer849493.01Polytomella magna
90NC
(BC)		mS38polymer314004.11Polytomella magna
91OC
(BD)		mS45polymer27030779.91Polytomella magna
92PC
(BE)		mS106polymer17118552.01Polytomella magna
93QC
(BF)		mS107polymer37042316.91Polytomella magna
94RC
(Ya)		uS4m-2 (fragment)polymer18020395.11Polytomella magna
95SC
(Yb)		mS108polymer505864.71Polytomella magna
96TC
(Yc)		mS109polymer15918395.01Polytomella magna
97UC
(Yd)		mS110polymer9511168.01Polytomella magna
98VC
(Ye)		uS3m-2 (fragment)polymer10612220.11Polytomella magna
99WC
(Yf)		mS111polymer15017507.81Polytomella magna
100XC
(Yg)		mS112polymer677917.31Polytomella magna
101YC
(Yh)		mS113polymer657505.61Polytomella magna
102ZC
(Yi)		mS114polymer13215271.01Polytomella magna
103AD
(Yj)		mS115polymer38640611.51Polytomella magna
104BD
(Yk)		mS116polymer9210018.41Polytomella magna
105CD
(Yl)		uS7m-2 (fragment)polymer849622.21Polytomella magna
106DD
(Ua)		Unknownpolymer322813.51Polytomella magna
107ED
(Ub)		mL105polymer13115669.81Polytomella magna
108FD
(Ud)		Unknownpolymer433677.51Polytomella magna
109GD
(Ue)		Unknownpolymer474017.91Polytomella magna
110HD
(Uf)		Unknownpolymer816911.51Polytomella magna
111ID
(Ug)		Unknownpolymer726145.61Polytomella magna
112JD
(Uh)		Unknownpolymer484103.01Polytomella magna
113KD
(Ui)		Unknownpolymer262230.71Polytomella magna
114LD
(Uj)		Unknownpolymer9784.01Polytomella magna
115MD
(Uk)		Unknownpolymer231975.41Polytomella magna
116ND
(Ul)		Unknownpolymer161379.71Polytomella magna
117OD
(Um)		Unknownpolymer11954.21Polytomella magna
118AE, AF, AH, AI, BE...
(A3, A7, B1, B3, Bm...)		MAGNESIUM IONnon-polymer24.3112Chemie (MG)
119AG, AJ, BG, CI, DH...
(A7, B4, B3, B1, A3...)		POTASSIUM IONnon-polymer39.131Chemie (K)
120ZG
(AD)		ZINC IONnon-polymer65.41Chemie (ZN)
121DJ
(Bw)		ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
122AK, BK, CK, DK, EJ...
(Bm, Bo, Bp, Ya, A1...)		waterwater18.0504Chemie (HOH)
Sequence modifications
A4: 1 - 73 (GenBank: 485474616)
PDBExternal DatabaseDetails
-A 8648deletion
A 2-insertion
A5: 1 - 142 (GenBank: 485474616)
PDBExternal DatabaseDetails
U 1A 7517conflict
C 16U 7502conflict
C 19A 7499conflict
C 20A 7498conflict
A 21G 7497conflict
G 22C 7496conflict
G 23A 7495conflict
A 24G 7494conflict
G 25C 7493conflict
G 28A 7490conflict
G 34A 7484conflict
C 42U 7476conflict
C 47G 7471conflict
U 48A 7470conflict
U 49C 7469conflict
G 51-insertion
A 52-insertion
A 63G 7457conflict
A7: 1 - 576 (GenBank: 485474616)
PDBExternal DatabaseDetails
A 236U 10821conflict
A8: 1 - 350 (GenBank: 485474616)
PDBExternal DatabaseDetails
A 346U 22669conflict
A 349U 22672conflict
A 350G 22673conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains119
Total formula weight2877261.9
Non-Polymers*Number of molecules145
Total formula weight4506.8
All*Total formula weight2881768.7
*Water molecules are not included.

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