8A22
Structure of the mitochondrial ribosome from Polytomella magna
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A1 | mtLSU-1 | polymer | 109 | 35302.2 | 1 | GenBank (485474616) | Polytomella magna | |
2 | A2 | mtLSU-2 | polymer | 81 | 26056.6 | 1 | GenBank (485474616) | Polytomella magna | |
3 | A3 | mtLSU-3 | polymer | 210 | 67578.1 | 1 | GenBank (485474616) | Polytomella magna | |
4 | A4 | mtLSU-4 | polymer | 73 | 23661.3 | 1 | GenBank (485474616) | Polytomella magna | |
5 | A5 | mtLSU-5 | polymer | 142 | 45703.2 | 1 | GenBank (485474616) | Polytomella magna | |
6 | A6 | mtLSU-6 | polymer | 131 | 42369.3 | 1 | GenBank (485474616) | Polytomella magna | |
7 | A7 | mtLSU-7 | polymer | 576 | 185617.3 | 1 | GenBank (485474616) | Polytomella magna | |
8 | A8 | mtLSU-8 | polymer | 350 | 112621.3 | 1 | GenBank (485474616) | Polytomella magna | |
9 | A9 | mt-5S | polymer | 69 | 22130.1 | 1 | Polytomella magna | ||
10 | Aa | uL2m | polymer | 306 | 33873.2 | 1 | Polytomella magna | ||
11 | Ab | uL3m | polymer | 306 | 34287.7 | 1 | Polytomella magna | ||
12 | Ac | uL4m | polymer | 303 | 33741.5 | 1 | Polytomella magna | ||
13 | Ad | uL5m | polymer | 193 | 21894.4 | 1 | Polytomella magna | ||
14 | Ae | uL6m | polymer | 242 | 27446.1 | 1 | Polytomella magna | ||
15 | Af | uL9m | polymer | 56 | 6163.1 | 1 | Polytomella magna | ||
16 | Ah | uL13m | polymer | 186 | 21549.1 | 1 | Polytomella magna | ||
17 | Ai | uL14m | polymer | 121 | 13522.1 | 1 | Polytomella magna | ||
18 | Aj | uL15m | polymer | 206 | 22826.4 | 1 | Polytomella magna | ||
19 | Ak | uL16m | polymer | 166 | 19334.2 | 1 | Polytomella magna | ||
20 | Al | bL17m | polymer | 173 | 20047.5 | 1 | Polytomella magna | ||
21 | Am | uL18m | polymer | 114 | 12928.1 | 1 | Polytomella magna | ||
22 | An | bL19m | polymer | 170 | 19849.0 | 1 | Polytomella magna | ||
23 | Ao | bL20m | polymer | 117 | 13695.7 | 1 | Polytomella magna | ||
24 | Ap | bL21m | polymer | 200 | 22296.1 | 1 | Polytomella magna | ||
25 | Aq | uL22m | polymer | 188 | 21768.0 | 1 | Polytomella magna | ||
26 | Ar | uL23m | polymer | 155 | 18235.2 | 1 | Polytomella magna | ||
27 | As | bL24m | polymer | 115 | 13088.2 | 1 | Polytomella magna | ||
28 | At | bL25m | polymer | 253 | 28550.2 | 1 | Polytomella magna | ||
29 | Au | bL27m | polymer | 142 | 16266.6 | 1 | Polytomella magna | ||
30 | Av | bL28m | polymer | 129 | 15075.4 | 1 | Polytomella magna | ||
31 | Aw | uL29m | polymer | 123 | 14509.6 | 1 | Polytomella magna | ||
32 | Ax | uL30m | polymer | 176 | 20863.3 | 1 | Polytomella magna | ||
33 | Ay | bL31m | polymer | 72 | 8388.8 | 1 | Polytomella magna | ||
34 | Az | bL31m | polymer | 59 | 6690.0 | 1 | Polytomella magna | ||
35 | AA | bL33m | polymer | 50 | 5921.2 | 1 | Polytomella magna | ||
36 | AB | bL34m | polymer | 50 | 6149.4 | 1 | Polytomella magna | ||
37 | AC | bL35m | polymer | 139 | 16673.6 | 1 | Polytomella magna | ||
38 | AD | bL36m | polymer | 47 | 5495.7 | 1 | Polytomella magna | ||
39 | AE | mL40 | polymer | 92 | 10895.4 | 1 | Polytomella magna | ||
40 | AF | mL41 | polymer | 93 | 10819.6 | 1 | Polytomella magna | ||
41 | AG | mL43 | polymer | 121 | 14180.3 | 1 | Polytomella magna | ||
42 | AH | mL46 | polymer | 176 | 20078.2 | 1 | Polytomella magna | ||
43 | AI | mL63 | polymer | 64 | 7181.4 | 1 | Polytomella magna | ||
44 | AJ | mL64 | polymer | 122 | 14227.7 | 1 | Polytomella magna | ||
45 | AK | mL87 | polymer | 139 | 16437.8 | 1 | Polytomella magna | ||
46 | AL, AM, AN | mL116 | polymer | 420 | 46617.4 | 3 | Polytomella magna | ||
47 | AO | mL118 | polymer | 377 | 40870.8 | 1 | Polytomella magna | ||
48 | Xa | mL120 | polymer | 199 | 22283.5 | 1 | Polytomella magna | ||
49 | Xb | mL121 | polymer | 244 | 27805.8 | 1 | Polytomella magna | ||
50 | Xc | mL122 | polymer | 57 | 7019.0 | 1 | Polytomella magna | ||
51 | Xd | mL123 | polymer | 413 | 45953.6 | 1 | Polytomella magna | ||
52 | Xe | mL124 | polymer | 483 | 52212.2 | 1 | Polytomella magna | ||
53 | Xf | mL125 | polymer | 201 | 22855.1 | 1 | Polytomella magna | ||
54 | Xg | mL126 | polymer | 410 | 44063.2 | 1 | Polytomella magna | ||
55 | Xh | mL127 | polymer | 143 | 16291.1 | 1 | Polytomella magna | ||
56 | Xi | mL128 | polymer | 24 | 2949.5 | 1 | Polytomella magna | ||
57 | Xj | mL129 | polymer | 71 | 8260.2 | 1 | Polytomella magna | ||
58 | B1 | mtSSU-1 | polymer | 102 | 32708.3 | 1 | GenBank (485474616) | Polytomella magna | |
59 | B2 | mtSSU-2 | polymer | 214 | 68920.9 | 1 | GenBank (485474616) | Polytomella magna | |
60 | B3 | mtSSU-3 | polymer | 379 | 122239.4 | 1 | GenBank (485474616) | Polytomella magna | |
61 | B4 | mtSSU-4 | polymer | 348 | 112061.3 | 1 | GenBank (485474616) | Polytomella magna | |
62 | Ba | bS1m | polymer | 242 | 27632.0 | 1 | Polytomella magna | ||
63 | Bb | uS2m | polymer | 236 | 26625.8 | 1 | Polytomella magna | ||
64 | Bc | uS3m | polymer | 289 | 32378.9 | 1 | Polytomella magna | ||
65 | Bd | uS4m | polymer | 221 | 25534.6 | 1 | Polytomella magna | ||
66 | Be | uS5m | polymer | 228 | 25956.7 | 1 | Polytomella magna | ||
67 | Bf | uS6m | polymer | 119 | 13776.0 | 1 | Polytomella magna | ||
68 | Bg | uS7m | polymer | 112 | 12740.0 | 1 | Polytomella magna | ||
69 | Bh | uS8m | polymer | 374 | 43012.6 | 1 | Polytomella magna | ||
70 | Bi | uS9m | polymer | 282 | 32274.0 | 1 | Polytomella magna | ||
71 | Bj | uS10m | polymer | 401 | 45092.2 | 1 | Polytomella magna | ||
72 | Bk | uS11m | polymer | 116 | 12426.5 | 1 | Polytomella magna | ||
73 | Bl | uS12m | polymer | 123 | 13729.3 | 1 | Polytomella magna | ||
74 | Bm | uS13m | polymer | 113 | 12807.9 | 1 | Polytomella magna | ||
75 | Bn | uS14m | polymer | 118 | 13921.2 | 1 | Polytomella magna | ||
76 | Bo | uS15m | polymer | 167 | 18048.5 | 1 | Polytomella magna | ||
77 | Bp | bS16m | polymer | 123 | 14298.4 | 1 | Polytomella magna | ||
78 | Bq | uS17m | polymer | 130 | 15002.3 | 1 | Polytomella magna | ||
79 | Br | bS18m | polymer | 90 | 10606.4 | 1 | Polytomella magna | ||
80 | Bs | bS19m | polymer | 92 | 10384.8 | 1 | Polytomella magna | ||
81 | Bt | bS21m | polymer | 75 | 8829.3 | 1 | Polytomella magna | ||
82 | Bu | mS23 | polymer | 167 | 19393.3 | 1 | Polytomella magna | ||
83 | Bv | mS26 | polymer | 164 | 19292.0 | 1 | Polytomella magna | ||
84 | Bw | mS29 | polymer | 349 | 39111.9 | 1 | Polytomella magna | ||
85 | Bx | mS31 | polymer | 621 | 66912.0 | 1 | Polytomella magna | ||
86 | By | mS33 | polymer | 80 | 9192.5 | 1 | Polytomella magna | ||
87 | Bz | mS34 | polymer | 119 | 14053.0 | 1 | Polytomella magna | ||
88 | BA | mS35 | polymer | 176 | 19588.9 | 1 | Polytomella magna | ||
89 | BB | mS37 | polymer | 84 | 9493.0 | 1 | Polytomella magna | ||
90 | BC | mS38 | polymer | 31 | 4004.1 | 1 | Polytomella magna | ||
91 | BD | mS45 | polymer | 270 | 30779.9 | 1 | Polytomella magna | ||
92 | BE | mS106 | polymer | 171 | 18552.0 | 1 | Polytomella magna | ||
93 | BF | mS107 | polymer | 370 | 42316.9 | 1 | Polytomella magna | ||
94 | Ya | uS4m-2 (fragment) | polymer | 180 | 20395.1 | 1 | Polytomella magna | ||
95 | Yb | mS108 | polymer | 50 | 5864.7 | 1 | Polytomella magna | ||
96 | Yc | mS109 | polymer | 159 | 18395.0 | 1 | Polytomella magna | ||
97 | Yd | mS110 | polymer | 95 | 11168.0 | 1 | Polytomella magna | ||
98 | Ye | uS3m-2 (fragment) | polymer | 106 | 12220.1 | 1 | Polytomella magna | ||
99 | Yf | mS111 | polymer | 150 | 17507.8 | 1 | Polytomella magna | ||
100 | Yg | mS112 | polymer | 67 | 7917.3 | 1 | Polytomella magna | ||
101 | Yh | mS113 | polymer | 65 | 7505.6 | 1 | Polytomella magna | ||
102 | Yi | mS114 | polymer | 132 | 15271.0 | 1 | Polytomella magna | ||
103 | Yj | mS115 | polymer | 386 | 40611.5 | 1 | Polytomella magna | ||
104 | Yk | mS116 | polymer | 92 | 10018.4 | 1 | Polytomella magna | ||
105 | Yl | uS7m-2 (fragment) | polymer | 84 | 9622.2 | 1 | Polytomella magna | ||
106 | Ua | Unknown | polymer | 32 | 2813.5 | 1 | Polytomella magna | ||
107 | Ub | mL105 | polymer | 131 | 15669.8 | 1 | Polytomella magna | ||
108 | Ud | Unknown | polymer | 43 | 3677.5 | 1 | Polytomella magna | ||
109 | Ue | Unknown | polymer | 47 | 4017.9 | 1 | Polytomella magna | ||
110 | Uf | Unknown | polymer | 81 | 6911.5 | 1 | Polytomella magna | ||
111 | Ug | Unknown | polymer | 72 | 6145.6 | 1 | Polytomella magna | ||
112 | Uh | Unknown | polymer | 48 | 4103.0 | 1 | Polytomella magna | ||
113 | Ui | Unknown | polymer | 26 | 2230.7 | 1 | Polytomella magna | ||
114 | Uj | Unknown | polymer | 9 | 784.0 | 1 | Polytomella magna | ||
115 | Uk | Unknown | polymer | 23 | 1975.4 | 1 | Polytomella magna | ||
116 | Ul | Unknown | polymer | 16 | 1379.7 | 1 | Polytomella magna | ||
117 | Um | Unknown | polymer | 11 | 954.2 | 1 | Polytomella magna | ||
118 | A3, A7, B1, B3, Bm... | MAGNESIUM ION | non-polymer | 24.3 | 112 | Chemie (MG) | |||
119 | A7, B4, B3, B1, A3... | POTASSIUM ION | non-polymer | 39.1 | 31 | Chemie (K) | |||
120 | AD | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
121 | Bw | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
122 | water | water | 18.0 | 504 | Chemie (HOH) |
Sequence modifications
A4: 1 - 73 (GenBank: 485474616)
A5: 1 - 142 (GenBank: 485474616)
A7: 1 - 576 (GenBank: 485474616)
A8: 1 - 350 (GenBank: 485474616)
PDB | External Database | Details |
---|---|---|
- | A 8648 | deletion |
A 2 | - | insertion |
PDB | External Database | Details |
---|---|---|
U 1 | A 7517 | conflict |
C 16 | U 7502 | conflict |
C 19 | A 7499 | conflict |
C 20 | A 7498 | conflict |
A 21 | G 7497 | conflict |
G 22 | C 7496 | conflict |
G 23 | A 7495 | conflict |
A 24 | G 7494 | conflict |
G 25 | C 7493 | conflict |
G 28 | A 7490 | conflict |
G 34 | A 7484 | conflict |
C 42 | U 7476 | conflict |
C 47 | G 7471 | conflict |
U 48 | A 7470 | conflict |
U 49 | C 7469 | conflict |
G 51 | - | insertion |
A 52 | - | insertion |
A 63 | G 7457 | conflict |
PDB | External Database | Details |
---|---|---|
A 236 | U 10821 | conflict |
PDB | External Database | Details |
---|---|---|
A 346 | U 22669 | conflict |
A 349 | U 22672 | conflict |
A 350 | G 22673 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 119 |
Total formula weight | 2877261.9 | |
Non-Polymers* | Number of molecules | 145 |
Total formula weight | 4506.8 | |
All* | Total formula weight | 2881768.7 |