7ZOD
70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli | ribosomal protein bL28 |
| 2 | B (1) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli | ribosomal protein uL29 |
| 3 | C (2) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli | ribosomal protein uL30 |
| 4 | D (3) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli | ribosomal protein bL32 |
| 5 | E (4) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli | ribosomal protein bL33 |
| 6 | F (6) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli | ribosomal protein bL34 |
| 7 | G (7) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 8 | H (8) | 50S ribosomal protein L36 | polymer | 50 | 5720.1 | 1 | UniProt (A0A2X1PTA3) Pfam (PF00444) | Escherichia coli | |
| 9 | I (a) | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli | |
| 10 | J (b) | 23S rRNA | polymer | 2904 | 941620.4 | 1 | GenBank (2065591978) | Escherichia coli | |
| 11 | K (c) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF03947) Pfam (PF00181) | Escherichia coli | ribosomal protein uL2 |
| 12 | L (d) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | ribosomal protein uL3 |
| 13 | M (e) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli | ribosomal protein uL4 |
| 14 | N (f) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | ribosomal protein uL5 |
| 15 | O (g) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli | ribosomal protein uL6 |
| 16 | P (h) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | ribosomal protein bL9 |
| 17 | Q (j) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli | ribosomal protein uL13 |
| 18 | R (k) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli | ribosomal protein uL14 |
| 19 | S (l) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli | ribosomal protein uL15 |
| 20 | T (m) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (A0A829G538) Pfam (PF00252) UniProt (by SIFTS) (P0ADY7) | Escherichia coli | |
| 21 | U (n) | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli | ribosomal protein bL17 |
| 22 | V (o) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli | ribosomal protein uL18 |
| 23 | W (p) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli | ribosomal protein bL19 |
| 24 | X (q) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli | ribosomal protein bL20 |
| 25 | Y (r) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli | ribosomal protein bL21 |
| 26 | Z (s) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | ribosomal protein uL22 |
| 27 | AA (t) | 50S ribosomal protein L23 | polymer | 108 | 12032.1 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli | Large ribosomal subunit protein uL23 |
| 28 | BA (u) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli | ribosomal protein uL24 |
| 29 | CA (v) | Pro-tRNA | polymer | 77 | 24846.7 | 1 | GenBank (1847035720) | Escherichia coli | |
| 30 | DA (w) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli | ribosomal protein bL25 |
| 31 | EA (y) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | Large ribosomal subunit protein bL27 |
Sequence modifications
t: 1 - 108 (UniProt: P0ADZ0)
| PDB | External Database | Details |
|---|---|---|
| Arg 68 | - | insertion |
| Gln 69 | - | insertion |
| Met 70 | - | insertion |
| Thr 71 | - | insertion |
| Val 72 | Lys 68 | conflict |
| Ser 74 | His 70 | conflict |
| Gly 76 | Gln 72 | conflict |
| Val 78 | - | insertion |
| Arg 80 | - | insertion |
| Thr 81 | - | insertion |
| Ser 82 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 31 |
| Total formula weight | 1369670.0 | |
| All* | Total formula weight | 1369670.0 |
