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7ZJX

Rabbit 80S ribosome programmed with SECIS and SBP2

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1BSelenocysteine insertion sequence-binding protein 2polymer85495640.01UniProt (Q96T21)
Pfam (PF01248)
In PDB
Homo sapiens (human)SECIS-binding protein 2
2ICrPV IRESpolymer16352131.61Cricket paralysis virus
3L528S rRNApolymer48081557505.41Oryctolagus cuniculus (rabbit)
4L75S rRNApolymer12038851.91GenBank (39)Oryctolagus cuniculus (rabbit)
5L85.8S rRNApolymer15850809.01GenBank (57148)Oryctolagus cuniculus (rabbit)
6LD60S ribosomal protein uL2polymer25728088.91UniProt (A0A8B8VPA8)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Oryctolagus cuniculus (rabbit)
7LE60S ribosomal protein uL3polymer40346121.01UniProt (G1TL06)
Pfam (PF00297)
In PDB
Oryctolagus cuniculus (rabbit)
8LF60S ribosomal protein L4polymer41346430.91UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Oryctolagus cuniculus (rabbit)
9LGRibosomal_L18_c domain-containing proteinpolymer29734523.91UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB
Oryctolagus cuniculus (rabbit)
10LH60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Oryctolagus cuniculus (rabbit)
11LI60S ribosomal Protein uL30polymer24729201.81UniProt (A0A7J8C453)
Pfam (PF00327)
Pfam (PF08079)
In PDB
Oryctolagus cuniculus (rabbit)
12LJ60S ribosomal protein eL8polymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
13LK60S ribosomal protein L9polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)
In PDB
Oryctolagus cuniculus (rabbit)
14LLRibosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB
Oryctolagus cuniculus (rabbit)
15LM60S ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Oryctolagus cuniculus (rabbit)
16LO60S ribosomal protein eL13polymer21124331.71UniProt (G1TKB3)
Pfam (PF01294)
In PDB
Oryctolagus cuniculus (rabbit)
17LP60S ribosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
In PDB
Oryctolagus cuniculus (rabbit)
18LQRibosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB
Oryctolagus cuniculus (rabbit)
19LR60S ribosomal protein uL13polymer20323533.31UniProt (A0A0N8ETI8)
Pfam (PF00572)
In PDB
Oryctolagus cuniculus (rabbit)
20LS60S ribosomal protein uL22polymer18421444.21UniProt (A0A8J4KQ25)
Pfam (PF00237)
In PDB
Oryctolagus cuniculus (rabbit)
21LT60S ribosomal Protein eL18polymer18821699.71UniProt (F6QKI9)
Pfam (PF17135)
In PDB
Oryctolagus cuniculus (rabbit)
22LU60S ribosomal protein L19polymer19623535.31UniProt (A0A2J8KH59)
Pfam (PF01280)
In PDB
Oryctolagus cuniculus (rabbit)
23LV60S ribosomal protein eL20polymer17620749.41UniProt (A0A1Z5LHJ5)
Pfam (PF01775)
In PDB
Oryctolagus cuniculus (rabbit)
24LW60S ribosomal protein L21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB
Oryctolagus cuniculus (rabbit)
25LX60S ribosomal protein eL22polymer12814756.91UniProt (Q4R5I3)
Pfam (PF01776)
In PDB
Oryctolagus cuniculus (rabbit)
26LY60S ribosomal protein L23polymer14014892.51UniProt (A0A3P9HH38)
Pfam (PF00238)
In PDB
Oryctolagus cuniculus (rabbit)
27LZRibosomal protein L24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB
Oryctolagus cuniculus (rabbit)
28LaRibosomal_L23eN domain-containing proteinpolymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Oryctolagus cuniculus (rabbit)
29LbRibosomal protein L26polymer14517303.41UniProt (A0A5N3X333)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Oryctolagus cuniculus (rabbit)
30Lc60S ribosomal protein L27polymer13615835.81UniProt (A0A851LWS6)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Oryctolagus cuniculus (rabbit)
31Ld60S ribosomal protein L27apolymer14816620.61UniProt (G1SNY0)
Pfam (PF00828)
In PDB
Oryctolagus cuniculus (rabbit)
32Le60S ribosomal protein L29polymer24526721.71UniProt (G1SGR6)
Pfam (PF01779)
In PDB
Oryctolagus cuniculus (rabbit)
33Lf60S ribosomal protein L30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
34Lg60S ribosomal protein L31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB
Oryctolagus cuniculus (rabbit)
35LhRibosomal protein L32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
In PDB
Oryctolagus cuniculus (rabbit)
36Li60S ribosomal protein L35apolymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB
Oryctolagus cuniculus (rabbit)
37Lj60S ribosomal protein L34polymer11713326.11UniProt (G1TXG5)
Pfam (PF01199)
In PDB
Oryctolagus cuniculus (rabbit)
38Lk60S ribosomal protein L35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB
Oryctolagus cuniculus (rabbit)
39Ll60S ribosomal protein L36polymer10512263.81UniProt (A0A1S3FQR5)
Pfam (PF01158)
In PDB
Oryctolagus cuniculus (rabbit)
40LmRibosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB
Oryctolagus cuniculus (rabbit)
41Ln60S ribosomal protein L38polymer708238.91UniProt (A0A1A7W9T9)
Pfam (PF01781)
In PDB
Oryctolagus cuniculus (rabbit)
42Lo60S ribosomal protein eL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB
Oryctolagus cuniculus (rabbit)
43Lp60S ribosomal protein L40polymer12814800.51UniProt (A0A8C8Y9V5)
Pfam (PF00240)
Pfam (PF01020)
In PDB
Oryctolagus cuniculus (rabbit)
44Lq60S ribosomal protein eL42polymer10612490.01UniProt (A0A7J7V6K8)
Pfam (PF00935)
In PDB
Oryctolagus cuniculus (rabbit)
45Lr60S ribosomal protein eL43polymer9210299.41UniProt (A0A6I9ZMF9)
Pfam (PF01780)
In PDB
Oryctolagus cuniculus (rabbit)
46Ls60S ribosomal protein eL28polymer13715844.71UniProt (A0A4U1EJN3)
Pfam (PF01778)
In PDB
Oryctolagus cuniculus (rabbit)
47LxRibosomal proteinpolymer21724875.41UniProt (G1SKZ8)
Pfam (PF00687)
In PDB
Oryctolagus cuniculus (rabbit)
48SGPX4 SECIS elementpolymer855275721.71GenBank (25123295)Rattus norvegicus
49S218S rRNApolymer1870603814.11GenBank (37956930)Oryctolagus cuniculus (rabbit)
50SB40S ribosomal protein S27polymer849480.21UniProt (A0A7J8BG50)
Pfam (PF01667)
In PDB
Oryctolagus cuniculus (rabbit)
51SC40S ribosomal protein S28polymer697855.11UniProt (A0A3M0JHZ8)
Pfam (PF01200)
In PDB
Oryctolagus cuniculus (rabbit)
52SDUbiquitin carboxyl extension protein 80polymer15618004.01UniProt (A0A8C0T835)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Oryctolagus cuniculus (rabbit)Ubiquitin carboxyl extension protein 80
53SE40S ribosomal protein S30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB
Oryctolagus cuniculus (rabbit)
54SF40S ribosomal protein eS26polymer11513047.51UniProt (A0A2K5LQY6)
Pfam (PF01283)
In PDB
Oryctolagus cuniculus (rabbit)
55SGGuanine nucleotide-binding protein subunit beta-2-like 1polymer31735115.71UniProt (A0A2K6K8B0)
Pfam (PF00400)
In PDB
Oryctolagus cuniculus (rabbit)
56SH40S ribosomal protein S29polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB
Oryctolagus cuniculus (rabbit)
57SL40S ribosomal protein SApolymer29532970.01UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)
In PDB
Oryctolagus cuniculus (rabbit)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
58SM40S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB
Oryctolagus cuniculus (rabbit)
59SN40S ribosomal protein uS5polymer29331285.41UniProt (O18789)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Oryctolagus cuniculus (rabbit)
60SO40S ribosomal protein S3polymer28131146.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Oryctolagus cuniculus (rabbit)
61SP40S ribosomal protein S4polymer26329654.91UniProt (Q76N24)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Oryctolagus cuniculus (rabbit)
62SQRibosomal protein S5polymer20422913.51UniProt (A0A5F9DBR8)
Pfam (PF00177)
In PDB
Oryctolagus cuniculus (rabbit)
63SR40S ribosomal protein S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
In PDB
Oryctolagus cuniculus (rabbit)Phosphoprotein NP33,Small ribosomal subunit protein eS6
64SS40S ribosomal protein S7polymer43247356.21UniProt (G1SVB0)
In PDB
Oryctolagus cuniculus (rabbit)
65ST40S ribosomal protein S8polymer20824263.41UniProt (Q5E958)
Pfam (PF01201)
In PDB
Oryctolagus cuniculus (rabbit)
66SU40S ribosomal protein S9polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Oryctolagus cuniculus (rabbit)
67SVS10_plectin domain-containing proteinpolymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)
In PDB
Oryctolagus cuniculus (rabbit)
68SW40S ribosomal protein S11polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Oryctolagus cuniculus (rabbit)
69SX40S ribosomal protein S12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
70SY40S ribosomal protein S13polymer15117259.41UniProt (A0A663F1C0)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Oryctolagus cuniculus (rabbit)
71SZ40S ribosomal protein uS11polymer15116302.81UniProt (A0A7L0BEC6)
Pfam (PF00411)
In PDB
Oryctolagus cuniculus (rabbit)
72Sa40S ribosomal protein S15polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB
Oryctolagus cuniculus (rabbit)
73Sb40S ribosomal protein uS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)
In PDB
Oryctolagus cuniculus (rabbit)
74Sc40S ribosomal protein S17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB
Oryctolagus cuniculus (rabbit)
75Sd40S ribosomal protein S18polymer15217801.81UniProt (H0WTR0)
Pfam (PF00416)
In PDB
Oryctolagus cuniculus (rabbit)
76Se40S Ribosomal protein eS19polymer14516104.61UniProt (A0A2Y9E7Q1)
Pfam (PF01090)
In PDB
Oryctolagus cuniculus (rabbit)
77Sf40S ribosomal protein S20polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB
Oryctolagus cuniculus (rabbit)
78Sg40S ribosomal protein eS21polymer839181.41UniProt (A0A1Z5KTU7)
Pfam (PF01249)
In PDB
Oryctolagus cuniculus (rabbit)
79Sh40S ribosomal protein S15apolymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB
Oryctolagus cuniculus (rabbit)
80Si40S ribosomal protein S23polymer14315860.71UniProt (G1SZ47)
Pfam (PF00164)
In PDB
Oryctolagus cuniculus (rabbit)
81Sj40S ribosomal protein S24polymer13015107.91UniProt (A0A6J1UT65)
Pfam (PF01282)
In PDB
Oryctolagus cuniculus (rabbit)
82Sk40S ribosomal protein S25polymer12413645.01UniProt (A0A2U4BVW1)
Pfam (PF03297)
In PDB
Oryctolagus cuniculus (rabbit)
83Sl60S ribosomal protein L41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB
Oryctolagus cuniculus (rabbit)
84Lj, Lm, Lp, Lq, Lr...ZINC IONnon-polymer65.48Chemie (ZN)
Sequence modifications
B: 1 - 854 (UniProt: Q96T21)
PDBExternal DatabaseDetails
Arg 687Lys 687conflict
Ile 692Val 692conflict
LG: 1 - 297 (UniProt: G1SYJ6)
PDBExternal DatabaseDetails
Aac 2Gly 2conflict
LI: 1 - 247 (UniProt: A0A7J8C453)
PDBExternal DatabaseDetails
Asn 182Gly 193conflict
His 199Arg 210conflict
LJ: 1 - 266 (UniProt: P62424)
PDBExternal DatabaseDetails
Leu 184Ile 184conflict
LO: 1 - 211 (UniProt: G1TKB3)
PDBExternal DatabaseDetails
Arg 74His 74conflict
Arg 190His 190conflict
LR: 1 - 203 (UniProt: A0A0N8ETI8)
PDBExternal DatabaseDetails
Leu 174Ile 174conflict
Asp 194Glu 194conflict
LT: 1 - 188 (UniProt: F6QKI9)
PDBExternal DatabaseDetails
Arg 134Cys 134conflict
LV: 1 - 176 (UniProt: A0A1Z5LHJ5)
PDBExternal DatabaseDetails
Asn 36Ile 36conflict
LX: 1 - 128 (UniProt: Q4R5I3)
PDBExternal DatabaseDetails
Ala 60Val 60conflict
S: 403 - 1257 (GenBank: 25123295)
PDBExternal DatabaseDetails
U 1118C 773conflict
A 1126C 781conflict
A 1132U 787conflict
G 1133-insertion
C 1134-insertion
C 1135-insertion
C 1136-insertion
U 1150A 801conflict
S2: 1 - 1870 (GenBank: 37956930)
PDBExternal DatabaseDetails
C 251U 1725conflict
U 583C 1393conflict
A 584C 1392conflict
A 585G 1391conflict
4ac 1338C 638conflict
4ac 1843C 133conflict
SN: 1 - 293 (UniProt: O18789)
PDBExternal DatabaseDetails
Ile 33Val 33conflict
Ala 101Ser 101conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight4194928.3
Non-Polymers*Number of molecules8
Total formula weight523.3
All*Total formula weight4195451.5
*Water molecules are not included.

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PDB entries from 2024-07-24

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