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7ZJX

Rabbit 80S ribosome programmed with SECIS and SBP2

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(B)
Selenocysteine insertion sequence-binding protein 2polymer85495640.01UniProt (Q96T21)
Pfam (PF01248)
Homo sapiens (human)SECIS-binding protein 2
2B
(I)
CrPV IRESpolymer16352131.61Cricket paralysis virus
3C
(L5)
28S rRNApolymer48081557505.41Oryctolagus cuniculus (rabbit)
4D
(L7)
5S rRNApolymer12038851.91GenBank (39)Oryctolagus cuniculus (rabbit)
5E
(L8)
5.8S rRNApolymer15850809.01GenBank (57148)Oryctolagus cuniculus (rabbit)
6F
(LD)
60S ribosomal protein uL2polymer25728088.91UniProt (A0A8B8VPA8)
Pfam (PF00181)
Pfam (PF03947)
Oryctolagus cuniculus (rabbit)
7G
(LE)
60S ribosomal protein uL3polymer40346121.01UniProt (G1TL06)
Pfam (PF00297)
Oryctolagus cuniculus (rabbit)
8H
(LF)
60S ribosomal protein L4polymer41346430.91UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
Oryctolagus cuniculus (rabbit)
9I
(LG)
Ribosomal_L18_c domain-containing proteinpolymer29734523.91UniProt (G1SYJ6)
Pfam (PF17144)
Pfam (PF14204)
UniProt (by SIFTS) (P19949)
Oryctolagus cuniculus (rabbit)
10J
(LH)
60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF01159)
Pfam (PF03868)
Oryctolagus cuniculus (rabbit)
11K
(LI)
60S ribosomal Protein uL30polymer24729201.81UniProt (A0A7J8C453)
Pfam (PF08079)
Pfam (PF00327)
Oryctolagus cuniculus (rabbit)
12L
(LJ)
60S ribosomal protein eL8polymer26630061.81UniProt (P62424)
Pfam (PF01248)
Oryctolagus cuniculus (rabbit)
13M
(LK)
60S ribosomal protein L9polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)
Oryctolagus cuniculus (rabbit)
14N
(LL)
Ribosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
Oryctolagus cuniculus (rabbit)
15O
(LM)
60S ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
Oryctolagus cuniculus (rabbit)
16P
(LO)
60S ribosomal protein eL13polymer21124331.71UniProt (G1TKB3)
Pfam (PF01294)
Oryctolagus cuniculus (rabbit)
17Q
(LP)
60S ribosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
Oryctolagus cuniculus (rabbit)
18R
(LQ)
Ribosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
Oryctolagus cuniculus (rabbit)
19S
(LR)
60S ribosomal protein uL13polymer20323533.31UniProt (A0A0N8ETI8)Oryctolagus cuniculus (rabbit)
20T
(LS)
60S ribosomal protein uL22polymer18421444.21UniProt (A0A8J4KQ25)
Pfam (PF00237)
Oryctolagus cuniculus (rabbit)
21U
(LT)
60S ribosomal Protein eL18polymer18821699.71UniProt (F6QKI9)
Pfam (PF17135)
Oryctolagus cuniculus (rabbit)
22V
(LU)
60S ribosomal protein L19polymer19623535.31UniProt (A0A2J8KH59)Oryctolagus cuniculus (rabbit)
23W
(LV)
60S ribosomal protein eL20polymer17620749.41UniProt (A0A1Z5LHJ5)Oryctolagus cuniculus (rabbit)
24X
(LW)
60S ribosomal protein L21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
Oryctolagus cuniculus (rabbit)
25Y
(LX)
60S ribosomal protein eL22polymer12814756.91UniProt (Q4R5I3)
Pfam (PF01776)
Oryctolagus cuniculus (rabbit)
26Z
(LY)
60S ribosomal protein L23polymer14014892.51UniProt (A0A3P9HH38)Oryctolagus cuniculus (rabbit)
27AA
(LZ)
Ribosomal protein L24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
Oryctolagus cuniculus (rabbit)
28BA
(La)
Ribosomal_L23eN domain-containing proteinpolymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
Oryctolagus cuniculus (rabbit)
29CA
(Lb)
Ribosomal protein L26polymer14517303.41UniProt (A0A5N3X333)
Pfam (PF16906)
Pfam (PF00467)
Oryctolagus cuniculus (rabbit)
30DA
(Lc)
60S ribosomal protein L27polymer13615835.81UniProt (A0A851LWS6)
Pfam (PF00467)
Pfam (PF01777)
Oryctolagus cuniculus (rabbit)
31EA
(Ld)
60S ribosomal protein L27apolymer14816620.61UniProt (G1SNY0)
Pfam (PF00828)
Oryctolagus cuniculus (rabbit)
32FA
(Le)
60S ribosomal protein L29polymer24526721.71UniProt (G1SGR6)
Pfam (PF01779)
Oryctolagus cuniculus (rabbit)
33GA
(Lf)
60S ribosomal protein L30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
Oryctolagus cuniculus (rabbit)
34HA
(Lg)
60S ribosomal protein L31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
Oryctolagus cuniculus (rabbit)
35IA
(Lh)
Ribosomal protein L32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
Oryctolagus cuniculus (rabbit)
36JA
(Li)
60S ribosomal protein L35apolymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
Oryctolagus cuniculus (rabbit)
37KA
(Lj)
60S ribosomal protein L34polymer11713326.11UniProt (G1TXG5)
Pfam (PF01199)
Oryctolagus cuniculus (rabbit)
38LA
(Lk)
60S ribosomal protein L35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
Oryctolagus cuniculus (rabbit)
39MA
(Ll)
60S ribosomal protein L36polymer10512263.81UniProt (A0A1S3FQR5)
Pfam (PF01158)
Oryctolagus cuniculus (rabbit)
40NA
(Lm)
Ribosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
Oryctolagus cuniculus (rabbit)
41OA
(Ln)
60S ribosomal protein L38polymer708238.91UniProt (A0A1A7W9T9)Oryctolagus cuniculus (rabbit)
42PA
(Lo)
60S ribosomal protein eL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
Oryctolagus cuniculus (rabbit)
43QA
(Lp)
60S ribosomal protein L40polymer12814800.51UniProt (A0A8C8Y9V5)
Pfam (PF00240)
Pfam (PF01020)
Oryctolagus cuniculus (rabbit)
44RA
(Lq)
60S ribosomal protein eL42polymer10612490.01UniProt (A0A7J7V6K8)
Pfam (PF00935)
Oryctolagus cuniculus (rabbit)
45SA
(Lr)
60S ribosomal protein eL43polymer9210299.41UniProt (A0A6I9ZMF9)
Pfam (PF01780)
Oryctolagus cuniculus (rabbit)
46TA
(Ls)
60S ribosomal protein eL28polymer13715844.71UniProt (A0A4U1EJN3)
Pfam (PF01778)
Oryctolagus cuniculus (rabbit)
47UA
(Lx)
Ribosomal proteinpolymer21724875.41UniProt (G1SKZ8)
Pfam (PF00687)
Oryctolagus cuniculus (rabbit)
48VA
(S)
GPX4 SECIS elementpolymer855275721.71GenBank (25123295)Rattus norvegicus
49WA
(S2)
18S rRNApolymer1870603814.11GenBank (37956930)Oryctolagus cuniculus (rabbit)
50XA
(SB)
40S ribosomal protein S27polymer849480.21UniProt (A0A7J8BG50)
Pfam (PF01667)
Oryctolagus cuniculus (rabbit)
51YA
(SC)
40S ribosomal protein S28polymer697855.11UniProt (A0A3M0JHZ8)
Pfam (PF01200)
Oryctolagus cuniculus (rabbit)
52ZA
(SD)
Ubiquitin carboxyl extension protein 80polymer15618004.01UniProt (A0A8C0T835)Oryctolagus cuniculus (rabbit)Ubiquitin carboxyl extension protein 80
53AB
(SE)
40S ribosomal protein S30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
Oryctolagus cuniculus (rabbit)
54BB
(SF)
40S ribosomal protein eS26polymer11513047.51UniProt (A0A2K5LQY6)
Pfam (PF01283)
Oryctolagus cuniculus (rabbit)
55CB
(SG)
Guanine nucleotide-binding protein subunit beta-2-like 1polymer31735115.71UniProt (A0A2K6K8B0)
Pfam (PF00400)
Oryctolagus cuniculus (rabbit)
56DB
(SH)
40S ribosomal protein S29polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
Oryctolagus cuniculus (rabbit)
57EB
(SL)
40S ribosomal protein SApolymer29532970.01UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)
Oryctolagus cuniculus (rabbit)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
58FB
(SM)
40S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
Oryctolagus cuniculus (rabbit)
59GB
(SN)
40S ribosomal protein uS5polymer29331285.41UniProt (O18789)
Pfam (PF00333)
Pfam (PF03719)
Oryctolagus cuniculus (rabbit)
60HB
(SO)
40S ribosomal protein S3polymer28131146.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
Oryctolagus cuniculus (rabbit)
61IB
(SP)
40S ribosomal protein S4polymer26329654.91UniProt (Q76N24)Oryctolagus cuniculus (rabbit)
62JB
(SQ)
Ribosomal protein S5polymer20422913.51UniProt (A0A5F9DBR8)
Pfam (PF00177)
Oryctolagus cuniculus (rabbit)
63KB
(SR)
40S ribosomal protein S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
Oryctolagus cuniculus (rabbit)Phosphoprotein NP33,Small ribosomal subunit protein eS6
64LB
(SS)
40S ribosomal protein S7polymer43247356.21UniProt (G1SVB0)
Pfam (PF01251)
Oryctolagus cuniculus (rabbit)
65MB
(ST)
40S ribosomal protein S8polymer20824263.41UniProt (Q5E958)
Pfam (PF01201)
Oryctolagus cuniculus (rabbit)
66NB
(SU)
40S ribosomal protein S9polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
Oryctolagus cuniculus (rabbit)
67OB
(SV)
S10_plectin domain-containing proteinpolymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)
Oryctolagus cuniculus (rabbit)
68PB
(SW)
40S ribosomal protein S11polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
Oryctolagus cuniculus (rabbit)
69QB
(SX)
40S ribosomal protein S12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
Oryctolagus cuniculus (rabbit)
70RB
(SY)
40S ribosomal protein S13polymer15117259.41UniProt (A0A663F1C0)
Pfam (PF08069)
Pfam (PF00312)
Oryctolagus cuniculus (rabbit)
71SB
(SZ)
40S ribosomal protein uS11polymer15116302.81UniProt (A0A7L0BEC6)
Pfam (PF00411)
Oryctolagus cuniculus (rabbit)
72TB
(Sa)
40S ribosomal protein S15polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
Oryctolagus cuniculus (rabbit)
73UB
(Sb)
40S ribosomal protein uS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)
Oryctolagus cuniculus (rabbit)
74VB
(Sc)
40S ribosomal protein S17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
Oryctolagus cuniculus (rabbit)
75WB
(Sd)
40S ribosomal protein S18polymer15217801.81UniProt (H0WTR0)
Pfam (PF00416)
Oryctolagus cuniculus (rabbit)
76XB
(Se)
40S Ribosomal protein eS19polymer14516104.61UniProt (A0A2Y9E7Q1)
Pfam (PF01090)
Oryctolagus cuniculus (rabbit)
77YB
(Sf)
40S ribosomal protein S20polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
Oryctolagus cuniculus (rabbit)
78ZB
(Sg)
40S ribosomal protein eS21polymer839181.41UniProt (A0A1Z5KTU7)Oryctolagus cuniculus (rabbit)
79AC
(Sh)
40S ribosomal protein S15apolymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
Oryctolagus cuniculus (rabbit)
80BC
(Si)
40S ribosomal protein S23polymer14315860.71UniProt (G1SZ47)
Pfam (PF00164)
Oryctolagus cuniculus (rabbit)
81CC
(Sj)
40S ribosomal protein S24polymer13015107.91UniProt (A0A6J1UT65)
Pfam (PF01282)
Oryctolagus cuniculus (rabbit)
82DC
(Sk)
40S ribosomal protein S25polymer12413645.01UniProt (A0A2U4BVW1)
Pfam (PF03297)
Oryctolagus cuniculus (rabbit)
83EC
(Sl)
60S ribosomal protein L41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
Oryctolagus cuniculus (rabbit)
84FC, GC, HC, IC, JC...
(Lj, Lm, Lp, Lq, Lr...)
ZINC IONnon-polymer65.48Chemie (ZN)
Sequence modifications
B: 1 - 854 (UniProt: Q96T21)
PDBExternal DatabaseDetails
Arg 687Lys 687conflict
Ile 692Val 692conflict
LG: 1 - 297 (UniProt: G1SYJ6)
PDBExternal DatabaseDetails
Aac 2Gly 2conflict
LI: 1 - 247 (UniProt: A0A7J8C453)
PDBExternal DatabaseDetails
Asn 182Gly 193conflict
His 199Arg 210conflict
LJ: 1 - 266 (UniProt: P62424)
PDBExternal DatabaseDetails
Leu 184Ile 184conflict
LO: 1 - 211 (UniProt: G1TKB3)
PDBExternal DatabaseDetails
Arg 74His 74conflict
Arg 190His 190conflict
LR: 1 - 203 (UniProt: A0A0N8ETI8)
PDBExternal DatabaseDetails
Leu 174Ile 174conflict
Asp 194Glu 194conflict
LT: 1 - 188 (UniProt: F6QKI9)
PDBExternal DatabaseDetails
Arg 134Cys 134conflict
LV: 1 - 176 (UniProt: A0A1Z5LHJ5)
PDBExternal DatabaseDetails
Asn 36Ile 36conflict
LX: 1 - 128 (UniProt: Q4R5I3)
PDBExternal DatabaseDetails
Ala 60Val 60conflict
S: 403 - 1257 (GenBank: 25123295)
PDBExternal DatabaseDetails
U 1118C 773conflict
A 1126C 781conflict
A 1132U 787conflict
G 1133-insertion
C 1134-insertion
C 1135-insertion
C 1136-insertion
U 1150A 801conflict
S2: 1 - 1870 (GenBank: 37956930)
PDBExternal DatabaseDetails
C 251U 1725conflict
U 583C 1393conflict
A 584C 1392conflict
A 585G 1391conflict
4ac 1338C 638conflict
4ac 1843C 133conflict
SN: 1 - 293 (UniProt: O18789)
PDBExternal DatabaseDetails
Ile 33Val 33conflict
Ala 101Ser 101conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight4194928.3
Non-Polymers*Number of molecules8
Total formula weight523.3
All*Total formula weight4195451.5
*Water molecules are not included.

247947

PDB entries from 2026-01-21

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