7ZIL
JC Polyomavirus VP1 in complex with 3'-Sialyllactose glycomacromolecules (aliphatic linker)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (AAA, BBB, CCC, DDD, EEE) | Major capsid protein VP1 | polymer | 272 | 30075.9 | 5 | UniProt (P03089) Pfam (PF00718) | JC polyomavirus | Major structural protein VP1 |
| 2 | F, G, H (BaB, CaC, DaD) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 633.6 | 3 | In PDB BIRD (PRD_002415) GlyTouCan (G91237TK) | |||
| 3 | I, J, K, O, U... (AAA, BBB, DDD, EEE) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 4 | AA, L, P (EEE, AAA, BBB) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 5 | BA, CA, M, N, Q... (EEE, AAA, BBB, CCC, DDD) | SODIUM ION | non-polymer | 23.0 | 10 | Chemie (NA) | |||
| 6 | X (EEE) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 7 | DA, EA, FA, GA, HA (AAA, BBB, CCC, DDD, EEE) | water | water | 18.0 | 1965 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE: 22 - 289 (UniProt: P03089)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150379.3 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1900.7 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 876.9 | |
| All* | Total formula weight | 153156.8 |
