7Z3N
Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 26S rRNA | polymer | 3337 | 1078730.1 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 2 | B (2) | 18S rRNA | polymer | 1796 | 578772.5 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 3 | C (3) | 5S rRNA | polymer | 120 | 38596.9 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 4 | D (4) | 5.8S rRNA | polymer | 156 | 50147.7 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 5 | E (A) | Putative guanine nucleotide-binding protein | polymer | 316 | 35149.6 | 1 | UniProt (G0S9U0) Pfam (PF00400) | Thermochaetoides thermophila DSM 1495 | |
| 6 | F (B) | HABP4_PAI-RBP1 domain-containing protein | polymer | 302 | 32667.9 | 1 | UniProt (G0S428) Pfam (PF09598) Pfam (PF04774) | Thermochaetoides thermophila DSM 1495 | |
| 7 | G (C) | Putative ribosome associated protein | polymer | 446 | 51048.6 | 1 | UniProt (G0RYD6) Pfam (PF21884) Pfam (PF16717) Pfam (PF00226) | Thermochaetoides thermophila DSM 1495 | |
| 8 | H (D) | Putative heat shock protein | polymer | 578 | 62449.4 | 1 | UniProt (G0RZX9) Pfam (PF00012) | Thermochaetoides thermophila DSM 1495 | |
| 9 | I (LA) | 60S ribosomal protein L2-like protein | polymer | 254 | 27598.9 | 1 | UniProt (G0S4P8) Pfam (PF00181) Pfam (PF03947) | Thermochaetoides thermophila DSM 1495 | |
| 10 | J (LB) | 60S ribosomal protein L3-like protein | polymer | 392 | 44456.9 | 1 | UniProt (G0RXW1) Pfam (PF00297) | Thermochaetoides thermophila DSM 1495 | |
| 11 | K (LC) | 60S ribosomal protein L4-like protein | polymer | 365 | 39439.9 | 1 | UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) | Thermochaetoides thermophila DSM 1495 | |
| 12 | L (LD) | 60S ribosomal protein l5-like protein | polymer | 304 | 35034.6 | 1 | UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) | Thermochaetoides thermophila DSM 1495 | |
| 13 | M (LE) | 60S ribosomal protein L6 | polymer | 200 | 22133.0 | 1 | UniProt (G0S0D6) Pfam (PF01159) | Thermochaetoides thermophila DSM 1495 | |
| 14 | N (LF) | 60S ribosomal protein l7-like protein | polymer | 249 | 28821.8 | 1 | UniProt (G0SFL0) Pfam (PF08079) Pfam (PF00327) | Thermochaetoides thermophila DSM 1495 | |
| 15 | O (LG) | 60S ribosomal protein L8 | polymer | 262 | 29744.5 | 1 | UniProt (G0SAJ9) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 16 | P (LH) | uL6 | polymer | 192 | 21582.1 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 17 | Q (LI) | 60S ribosomal protein L10-like protein | polymer | 219 | 25255.4 | 1 | UniProt (G0SEI1) Pfam (PF00252) | Thermochaetoides thermophila DSM 1495 | |
| 18 | R (LJ) | Putative ribosomal protein | polymer | 173 | 20119.3 | 1 | UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) | Thermochaetoides thermophila DSM 1495 | |
| 19 | S (LK) | 60S ribosomal protein L12-like protein | polymer | 165 | 17802.7 | 1 | UniProt (G0SGH8) Pfam (PF03946) Pfam (PF00298) | Thermochaetoides thermophila DSM 1495 | |
| 20 | T (LL) | 60S ribosomal protein L13 | polymer | 213 | 24191.2 | 1 | UniProt (G0S992) Pfam (PF01294) | Thermochaetoides thermophila DSM 1495 | |
| 21 | U (LM) | 60S ribosomal protein L14-like protein | polymer | 142 | 16111.9 | 1 | UniProt (G0S1R0) Pfam (PF01929) | Thermochaetoides thermophila DSM 1495 | |
| 22 | V (LN) | Ribosomal protein L15 | polymer | 203 | 24307.3 | 1 | UniProt (G0RZ88) Pfam (PF00827) | Thermochaetoides thermophila DSM 1495 | |
| 23 | W (LO) | 60S ribosomal protein L16-like protein | polymer | 204 | 23035.2 | 1 | UniProt (G0SH61) Pfam (PF00572) | Thermochaetoides thermophila DSM 1495 | |
| 24 | X (LP) | 60S ribosomal protein l17-like protein | polymer | 187 | 21072.2 | 1 | UniProt (G0SGY1) Pfam (PF00237) | Thermochaetoides thermophila DSM 1495 | |
| 25 | Y (LQ) | Ribosomal protein L18-like protein | polymer | 213 | 24195.5 | 1 | UniProt (G0S9B5) Pfam (PF17135) | Thermochaetoides thermophila DSM 1495 | |
| 26 | Z (LR) | Ribosomal protein L19 | polymer | 192 | 22409.2 | 1 | UniProt (G0S9T3) Pfam (PF01280) | Thermochaetoides thermophila DSM 1495 | |
| 27 | AA (LS) | 60S ribosomal protein L20 | polymer | 174 | 20341.9 | 1 | UniProt (G0SCE2) Pfam (PF01775) | Thermochaetoides thermophila DSM 1495 | |
| 28 | BA (LT) | 60S ribosomal protein l21-like protein | polymer | 160 | 18159.2 | 1 | UniProt (G0S0Z3) Pfam (PF01157) | Thermochaetoides thermophila DSM 1495 | |
| 29 | CA (LU) | 60S ribosomal protein L22-like protein | polymer | 127 | 14302.6 | 1 | UniProt (G0SDS8) Pfam (PF01776) | Thermochaetoides thermophila DSM 1495 | |
| 30 | DA (LV) | 60S ribosomal protein l23-like protein | polymer | 139 | 14674.4 | 1 | UniProt (G0SI44) Pfam (PF00238) | Thermochaetoides thermophila DSM 1495 | |
| 31 | EA (LW) | eL24 | polymer | 161 | 18081.1 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 32 | FA (LX) | 60S ribosomal protein L25-like protein | polymer | 156 | 17175.3 | 1 | UniProt (G0S507) Pfam (PF03939) Pfam (PF00276) | Thermochaetoides thermophila DSM 1495 | |
| 33 | GA (LY) | 60S ribosomal protein L26-like protein | polymer | 138 | 15565.3 | 1 | UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) | Thermochaetoides thermophila DSM 1495 | |
| 34 | HA (LZ) | 60S ribosomal protein L27 | polymer | 135 | 15803.7 | 1 | UniProt (G0RZE9) Pfam (PF01777) | Thermochaetoides thermophila DSM 1495 | |
| 35 | IA (La) | 60S ribosomal protein L28-like protein | polymer | 149 | 16848.5 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 36 | JA (Lb) | 60S ribosomal protein L29 | polymer | 65 | 7529.7 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 37 | KA (Lc) | 60S ribosomal protein l30-like protein | polymer | 108 | 11602.6 | 1 | UniProt (G0SEI0) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 38 | LA (Ld) | Putative 60S ribosomal protein | polymer | 120 | 13872.2 | 1 | UniProt (G0SD68) Pfam (PF01198) | Thermochaetoides thermophila DSM 1495 | |
| 39 | MA (Le) | 60S ribosomal protein L32-like protein | polymer | 131 | 15096.0 | 1 | UniProt (G0S6V4) Pfam (PF01655) | Thermochaetoides thermophila DSM 1495 | |
| 40 | NA (Lf) | 60S ribosomal protein l33-like protein | polymer | 109 | 12330.3 | 1 | UniProt (G0SCL3) Pfam (PF01247) | Thermochaetoides thermophila DSM 1495 | |
| 41 | OA (Lg) | Ribosomal protein l34-like protein | polymer | 119 | 13493.0 | 1 | UniProt (G0SFN0) Pfam (PF01199) | Thermochaetoides thermophila DSM 1495 | |
| 42 | PA (Lh) | Dolichyl-diphosphooligosaccharide--protein glycotransferase | polymer | 126 | 14643.4 | 1 | UniProt (G0S0D7) Pfam (PF00831) | Thermochaetoides thermophila DSM 1495 | |
| 43 | QA (Li) | 60S ribosomal protein L36 | polymer | 110 | 12784.1 | 1 | UniProt (G0SBN1) Pfam (PF01158) | Thermochaetoides thermophila DSM 1495 | |
| 44 | RA (Lj) | Ribosomal protein L37 | polymer | 95 | 10660.5 | 1 | UniProt (G0S101) Pfam (PF01907) | Thermochaetoides thermophila DSM 1495 | |
| 45 | SA (Lk) | eL38 | polymer | 81 | 9537.3 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 46 | TA (Ll) | Ribosomal protein eL39 | polymer | 51 | 6297.5 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 47 | UA (Lm) | Putative ribosomal protein | polymer | 128 | 14609.2 | 1 | UniProt (G0S8G4) Pfam (PF00240) Pfam (PF01020) | Thermochaetoides thermophila DSM 1495 | |
| 48 | VA, ZA (Ln, Lr) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 2 | Thermochaetoides thermophila DSM 1495 | ||
| 49 | WA (Lo) | 60S ribosomal protein L44-like protein | polymer | 106 | 12045.5 | 1 | UniProt (G0SBZ6) Pfam (PF00935) | Thermochaetoides thermophila DSM 1495 | |
| 50 | XA (Lp) | 60S ribosomal protein L43-like protein | polymer | 92 | 10159.0 | 1 | UniProt (G0S6B0) Pfam (PF01780) | Thermochaetoides thermophila DSM 1495 | |
| 51 | YA (Lq) | Putative 60S ribosomal protein | polymer | 147 | 15960.5 | 1 | UniProt (G0SHJ6) Pfam (PF01778) | Thermochaetoides thermophila DSM 1495 | |
| 52 | AB (Ls) | 60S acidic ribosomal protein P0 | polymer | 312 | 33853.6 | 1 | UniProt (G0SGP3) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Thermochaetoides thermophila DSM 1495 | |
| 53 | BB (NC) | Nascent chain | polymer | 27 | 2315.8 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 54 | CB (SA) | 40S ribosomal protein S0 | polymer | 285 | 31159.0 | 1 | UniProt (G0RYF9) Pfam (PF00318) | Thermochaetoides thermophila DSM 1495 | |
| 55 | DB (SB) | 40S ribosomal protein S1 | polymer | 255 | 29245.2 | 1 | UniProt (G0S7T8) Pfam (PF01015) | Thermochaetoides thermophila DSM 1495 | |
| 56 | EB (SC) | 40S ribosomal protein S2-like protein | polymer | 263 | 28556.1 | 1 | UniProt (G0SAV4) Pfam (PF00333) Pfam (PF03719) | Thermochaetoides thermophila DSM 1495 | |
| 57 | FB (SD) | 40S ribosomal protein S3-like protein | polymer | 254 | 27893.0 | 1 | UniProt (G0S6I7) Pfam (PF07650) Pfam (PF00189) | Thermochaetoides thermophila DSM 1495 | |
| 58 | GB (SE) | 40S ribosomal protein S4 | polymer | 264 | 29800.8 | 1 | UniProt (G0S1A6) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Thermochaetoides thermophila DSM 1495 | |
| 59 | HB (SF) | 40S ribosomal protein s5-like protein | polymer | 212 | 23679.2 | 1 | UniProt (G0S1Z0) Pfam (PF00177) | Thermochaetoides thermophila DSM 1495 | |
| 60 | IB (SG) | 40S ribosomal protein S6 | polymer | 239 | 27490.1 | 1 | UniProt (G0RY43) Pfam (PF01092) | Thermochaetoides thermophila DSM 1495 | |
| 61 | JB (SH) | 40S ribosomal protein S7 | polymer | 203 | 23084.7 | 1 | UniProt (G0S8C4) Pfam (PF01251) | Thermochaetoides thermophila DSM 1495 | |
| 62 | KB (SI) | 40S ribosomal protein S8 | polymer | 202 | 23102.4 | 1 | UniProt (G0RY45) Pfam (PF01201) | Thermochaetoides thermophila DSM 1495 | |
| 63 | LB (SJ) | 40S ribosomal protein s9-like protein | polymer | 190 | 22029.8 | 1 | UniProt (G0S0Z4) Pfam (PF00163) Pfam (PF01479) | Thermochaetoides thermophila DSM 1495 | |
| 64 | MB (SK) | 40S ribosomal protein s10-like protein | polymer | 159 | 18121.5 | 1 | UniProt (G0RZD8) Pfam (PF03501) | Thermochaetoides thermophila DSM 1495 | |
| 65 | NB (SL) | 40S ribosomal protein S11-like protein | polymer | 161 | 18698.2 | 1 | UniProt (G0SF00) Pfam (PF16205) Pfam (PF00366) | Thermochaetoides thermophila DSM 1495 | |
| 66 | OB (SM) | 40S ribosomal protein S12 | polymer | 144 | 15961.3 | 1 | UniProt (G0SHH9) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 67 | PB (SN) | 40S ribosomal protein S13-like protein | polymer | 151 | 16912.9 | 1 | UniProt (G0RZM9) Pfam (PF08069) Pfam (PF00312) | Thermochaetoides thermophila DSM 1495 | |
| 68 | QB (SO) | 40S ribosomal protein S14-like protein | polymer | 150 | 16071.5 | 1 | UniProt (G0SFL1) Pfam (PF00411) | Thermochaetoides thermophila DSM 1495 | |
| 69 | RB (SP) | 40S ribosomal protein s15-like protein | polymer | 153 | 17601.6 | 1 | UniProt (G0S084) Pfam (PF00203) | Thermochaetoides thermophila DSM 1495 | |
| 70 | SB (SQ) | 40S ribosomal protein S16-like protein | polymer | 143 | 15962.8 | 1 | UniProt (G0SBR7) Pfam (PF00380) | Thermochaetoides thermophila DSM 1495 | |
| 71 | TB (SR) | 40S ribosomal protein S17-like protein | polymer | 143 | 16720.2 | 1 | UniProt (G0S871) Pfam (PF00833) | Thermochaetoides thermophila DSM 1495 | |
| 72 | UB (SS) | Putative ribosomal protein | polymer | 156 | 17826.7 | 1 | UniProt (G0S6J7) Pfam (PF00416) | Thermochaetoides thermophila DSM 1495 | |
| 73 | VB (ST) | 40S ribosomal protein S19-like protein | polymer | 153 | 17151.3 | 1 | UniProt (G0SFK8) Pfam (PF01090) | Thermochaetoides thermophila DSM 1495 | |
| 74 | WB (SU) | 40S ribosomal protein S20-like protein | polymer | 116 | 13212.6 | 1 | UniProt (G0S379) Pfam (PF00338) | Thermochaetoides thermophila DSM 1495 | |
| 75 | XB (SV) | 40S ribosomal protein S21-like protein | polymer | 98 | 10961.5 | 1 | UniProt (G0SI21) Pfam (PF01249) | Thermochaetoides thermophila DSM 1495 | |
| 76 | YB (SW) | 40S ribosomal protein S22-like protein | polymer | 130 | 14905.5 | 1 | UniProt (G0SHI0) Pfam (PF00410) | Thermochaetoides thermophila DSM 1495 | |
| 77 | ZB (SX) | 40S ribosomal protein s23-like protein | polymer | 145 | 15934.7 | 1 | UniProt (G0RY17) Pfam (PF00164) | Thermochaetoides thermophila DSM 1495 | |
| 78 | AC (SY) | 40S ribosomal protein S24 | polymer | 136 | 15535.3 | 1 | UniProt (P0CU28) Pfam (PF01282) | Thermochaetoides thermophila DSM 1495 | |
| 79 | BC (SZ) | 40S ribosomal protein S25 | polymer | 99 | 10932.9 | 1 | UniProt (G0S1Y9) Pfam (PF03297) | Thermochaetoides thermophila DSM 1495 | |
| 80 | CC (Sa) | 40S ribosomal protein S26 | polymer | 119 | 13616.2 | 1 | UniProt (G0S2X4) Pfam (PF01283) | Thermochaetoides thermophila DSM 1495 | |
| 81 | DC (Sb) | Ribosomal protein s27-like protein | polymer | 82 | 8923.6 | 1 | UniProt (G0S1S4) Pfam (PF01667) | Thermochaetoides thermophila DSM 1495 | |
| 82 | EC (Sc) | 40S ribosomal protein S28-like protein | polymer | 68 | 7742.0 | 1 | UniProt (G0S9M9) Pfam (PF01200) | Thermochaetoides thermophila DSM 1495 | |
| 83 | FC (Sd) | Ribosomal protein uS14 | polymer | 56 | 6504.6 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 84 | GC (Se) | 40S ribosomal protein S30 | polymer | 62 | 6910.3 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 85 | HC (Sf) | 40S ribosomal protein S27a-like protein | polymer | 154 | 17731.8 | 1 | UniProt (G0S2X5) Pfam (PF01599) Pfam (PF00240) | Thermochaetoides thermophila DSM 1495 | |
| 86 | AD, AE, AF, AG, AH... (1, 2, 4, SQ, D...) | MAGNESIUM ION | non-polymer | 24.3 | 455 | Chemie (MG) | |||
| 87 | IT (D) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 88 | BU, CU, DU, TT, UT... (Sa, Sb, Sd, Lg, Lj...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) |
Sequence modifications
Lm: 1 - 128 (UniProt: G0S8G4)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | Ser 593 | conflict |
| Gln 2 | Arg 594 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 86 |
| Total formula weight | 3349304.0 | |
| Non-Polymers* | Number of molecules | 464 |
| Total formula weight | 12089.2 | |
| All* | Total formula weight | 3361393.3 |
