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7Z34

Structure of pre-60S particle bound to DRG1(AFG2).

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, AB, BB, RA, SA...
(Aa, m, n, t, w...)
ATPase family gene 2 proteinpolymer78084850.76UniProt (P32794)
Pfam (PF00004)
Pfam (PF17862)
Saccharomyces cerevisiae S288CDiazaborine resistance gene 1 protein
2B
(1)
35S pre-ribosomal RNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae S288C
3C
(2)
5S rRNApolymer12138951.11GenBank (834774822)Saccharomyces cerevisiae S288C
4D
(3)
5.8S rRNApolymer15850682.91GenBank (940534893)Saccharomyces cerevisiae S288C
5E
(4)
Probable metalloprotease ARX1polymer59365290.31UniProt (Q03862)Saccharomyces cerevisiae S288CAssociated with ribosomal export complex protein 1
6F
(A)
60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae S288CL5,Large ribosomal subunit protein uL2-A,RP8,YL6
7G
(B)
60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
8H
(C)
60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae S288CL2,Large ribosomal subunit protein uL4-A,RP2,YL2
9I
(D)
60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae S288CL1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
10J
(E)
60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae S288CL17,Large ribosomal subunit protein eL6-A,RP18,YL16
11K
(F)
60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae S288CL6,Large ribosomal subunit protein uL30-A,RP11,YL8
12L
(G)
60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae S288CL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
13M
(H)
60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae S288CL8,RP24,YL11
14N
(I)
Bud site selection protein 20polymer16618547.01UniProt (Q08004)
Pfam (PF12171)
Saccharomyces cerevisiae S288C
15O
(J)
60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae S288CL16,Large ribosomal subunit protein uL5-A,RP39,YL22
16P
(K)
60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae S288CL27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
17Q
(L)
60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL13-A
18R
(M)
60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL14-A
19S
(N)
60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae S288CL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
20T
(O)
60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae S288CL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
21U
(P)
60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae S288CL20A,Large ribosomal subunit protein uL22-A,YL17
22V
(Q)
60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL18-A,RP28
23W
(R)
60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae S288CL23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
24X
(S)
60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae S288CL18a
25Y
(T)
60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL21-A
26Z
(U)
60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae S288CL1c,Large ribosomal subunit protein eL22-A,RP4,YL31
27AA
(V)
60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae S288CL17a,Large ribosomal subunit protein uL14-A,YL32
28BA
(W)
Ribosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
Saccharomyces cerevisiae S288CmRNA turnover protein 4
29CA
(X)
60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL23,RP16L,YL25,YP42'
30DA
(Y)
60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae S288CL33,Large ribosomal subunit protein uL24-A,YL33
31EA
(Z)
60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL27-A
32FA
(a)
60S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
Saccharomyces cerevisiae S288CL15,Large ribosomal subunit protein uL11-A,YL23
33GA
(b)
Nucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Saccharomyces cerevisiae S288C
34HA
(c)
60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae S288CL32,Large ribosomal subunit protein eL30,RP73,YL38
35IA
(d)
60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae S288CL34,Large ribosomal subunit protein eL31-A,YL28
36JA
(e)
60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL32
37KA
(f)
60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae S288CL37,Large ribosomal subunit protein eL33-A,RP47,YL37
38LA
(g)
60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL34-A
39MA
(h)
60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL29-A
40NA
(i)
60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae S288CL39,Large ribosomal subunit protein eL36-A,YL39
41OA
(j)
60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae S288CL43,Large ribosomal subunit protein eL37-A,YL35,YP55
42PA
(k)
60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL38
43QA
(l)
60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae S288CL46,Large ribosomal subunit protein eL39,YL40
44TA
(o)
60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL29,YL43
45UA
(p)
60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae S288CL37a,Large ribosomal subunit protein eL43-A,YL35
46VA
(q)
60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae S288CL41,Large ribosomal subunit protein eL42-A,YL27,YP44
47WA
(r)
Ribosome biogenesis protein NSA2polymer26129786.81UniProt (P40078)
Pfam (PF01201)
Saccharomyces cerevisiae S288CNOP7-associated protein 2
48YA
(u)
Ribosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
Saccharomyces cerevisiae S288CRibosomal protein L24-like
49ZA
(v)
60S ribosomal export protein NMD3polymer51859167.01UniProt (P38861)
Pfam (PF04981)
Pfam (PF21193)
Pfam (PF21192)
Saccharomyces cerevisiae S288CNonsense-mediated mRNA decay protein 3
50CB
(y)
Eukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
Saccharomyces cerevisiae S288CeIF-6
51DB
(z)
UPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
Saccharomyces cerevisiae S288C
52EB
(0)
Unknown peptidepolymer191635.01Saccharomyces cerevisiae S288C
53FB
(oC)
Unknown proteinpolymer17014485.81Saccharomyces cerevisiae S288C ATCC 204508 / S288c
54GB, HB, JB, KB, LB...
(Aa, m, n, t, w...)
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTERnon-polymer523.211Chemie (AGS)
55IB
(b)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2750159.5
Non-Polymers*Number of molecules12
Total formula weight5780.0
All*Total formula weight2755939.5
*Water molecules are not included.

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PDB entries from 2025-06-11

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