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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7Z34

Structure of pre-60S particle bound to DRG1(AFG2).

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1Aa, m, n, t, w...ATPase family gene 2 proteinpolymer78084850.76UniProt (P32794)
Pfam (PF00004)
Pfam (PF17862)
In PDB		Saccharomyces cerevisiae S288CDiazaborine resistance gene 1 protein
2135S pre-ribosomal RNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae S288C
325S rRNApolymer12138951.11GenBank (834774822)Saccharomyces cerevisiae S288C
435.8S rRNApolymer15850682.91GenBank (940534893)Saccharomyces cerevisiae S288C
54Probable metalloprotease ARX1polymer59365290.31UniProt (Q03862)
In PDB		Saccharomyces cerevisiae S288CAssociated with ribosomal export complex protein 1
6A60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiae S288CL5,Large ribosomal subunit protein uL2-A,RP8,YL6
7B60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
8C60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae S288CL2,Large ribosomal subunit protein uL4-A,RP2,YL2
9D60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae S288CL1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
10E60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae S288CL17,Large ribosomal subunit protein eL6-A,RP18,YL16
11F60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae S288CL6,Large ribosomal subunit protein uL30-A,RP11,YL8
12G60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288CL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
13H60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae S288CL8,RP24,YL11
14IBud site selection protein 20polymer16618547.01UniProt (Q08004)
Pfam (PF12171)
In PDB		Saccharomyces cerevisiae S288C
15J60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae S288CL16,Large ribosomal subunit protein uL5-A,RP39,YL22
16K60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae S288CL27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
17L60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL13-A
18M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL14-A
19N60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae S288CL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
20O60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae S288CL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
21P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae S288CL20A,Large ribosomal subunit protein uL22-A,YL17
22Q60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL18-A,RP28
23R60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae S288CL23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
24S60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae S288CL18a
25T60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL21-A
26U60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae S288CL1c,Large ribosomal subunit protein eL22-A,RP4,YL31
27V60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae S288CL17a,Large ribosomal subunit protein uL14-A,YL32
28WRibosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Saccharomyces cerevisiae S288CmRNA turnover protein 4
29X60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL23,RP16L,YL25,YP42'
30Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae S288CL33,Large ribosomal subunit protein uL24-A,YL33
31Z60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL27-A
32a60S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Saccharomyces cerevisiae S288CL15,Large ribosomal subunit protein uL11-A,YL23
33bNucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Saccharomyces cerevisiae S288C
34c60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288CL32,Large ribosomal subunit protein eL30,RP73,YL38
35d60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae S288CL34,Large ribosomal subunit protein eL31-A,YL28
36e60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL32
37f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae S288CL37,Large ribosomal subunit protein eL33-A,RP47,YL37
38g60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL34-A
39h60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL29-A
40i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae S288CL39,Large ribosomal subunit protein eL36-A,YL39
41j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae S288CL43,Large ribosomal subunit protein eL37-A,YL35,YP55
42k60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL38
43l60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae S288CL46,Large ribosomal subunit protein eL39,YL40
44o60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL29,YL43
45p60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae S288CL37a,Large ribosomal subunit protein eL43-A,YL35
46q60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiae S288CL41,Large ribosomal subunit protein eL42-A,YL27,YP44
47rRibosome biogenesis protein NSA2polymer26129786.81UniProt (P40078)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiae S288CNOP7-associated protein 2
48uRibosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae S288CRibosomal protein L24-like
49v60S ribosomal export protein NMD3polymer51859167.01UniProt (P38861)
Pfam (PF04981)
Pfam (PF21193)
Pfam (PF21192)
In PDB		Saccharomyces cerevisiae S288CNonsense-mediated mRNA decay protein 3
50yEukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae S288CeIF-6
51zUPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
In PDB		Saccharomyces cerevisiae S288C
520Unknown peptidepolymer191635.01Saccharomyces cerevisiae S288C
53oCUnknown proteinpolymer17014485.81Saccharomyces cerevisiae S288C ATCC 204508 / S288c
54Aa, m, n, t, w...PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTERnon-polymer523.211Chemie (AGS)
55bMAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2750159.5
Non-Polymers*Number of molecules12
Total formula weight5780.0
All*Total formula weight2755939.5
*Water molecules are not included.

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PDB entries from 2024-08-28

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