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7YRD

histone methyltransferase

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, G
(A, E)
Histone H3.2polymer10312046.12UniProt (P84233)
Pfam (PF00125)
UniProt (by SIFTS) (Q71DI3)
Xenopus laevis (African clawed frog)
2B, H
(B, F)
Histone H4polymer10211265.22UniProt (P62799)
Pfam (PF15511)
UniProt (by SIFTS) (P62805)
Xenopus laevis (African clawed frog)
3C, D
(I, J)
DNA (146-MER)polymer14645054.82Homo sapiens
4E, I
(C, G)
Histone H2A.Zpolymer11312091.12UniProt (P0C0S5)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (human)H2A/z
5F, J
(D, H)
Histone H2B 1.1polymer9510607.22UniProt (P02281)
Pfam (PF00125)
UniProt (by SIFTS) (P06899)
Xenopus laevis (African clawed frog)H2B1.1
6K
(K)
[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5Bpolymer27932214.81UniProt (B7WNX0)
Pfam (PF00856)
UniProt (by SIFTS) (Q4FZB7)
Homo sapiens (human)[histone H4]-lysine20 N-methyltransferase KMT5B
7L
(K)
ZINC IONnon-polymer65.41Chemie (ZN)
8M
(K)
S-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
Sequence modifications
A, E: 33 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Glu 34Gly 35engineered mutation
Ala 102Gly 103engineered mutation
B, F: 1 - 102 (UniProt: P62799)
PDBExternal DatabaseDetails
Ecx 20Lys 21modified residue
D, H: 31 - 125 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 32Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight214343.8
Non-Polymers*Number of molecules2
Total formula weight463.8
All*Total formula weight214807.6
*Water molecules are not included.

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PDB entries from 2025-06-25

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