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7YRD

histone methyltransferase

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, G
(A, E)
Histone H3.2polymer10312046.12UniProt (P84233)
Pfam (PF00125)
UniProt (by SIFTS) (Q71DI3)
Xenopus laevis (African clawed frog)
2B, H
(B, F)
Histone H4polymer10211265.22UniProt (P62799)
Pfam (PF15511)
UniProt (by SIFTS) (P62805)
Xenopus laevis (African clawed frog)
3C, D
(I, J)
DNA (146-MER)polymer14645054.82Homo sapiens
4E, I
(C, G)
Histone H2A.Zpolymer11312091.12UniProt (P0C0S5)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (human)H2A/z
5F, J
(D, H)
Histone H2B 1.1polymer9510607.22UniProt (P02281)
Pfam (PF00125)
UniProt (by SIFTS) (P06899)
Xenopus laevis (African clawed frog)H2B1.1
6K
(K)
[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5Bpolymer27932214.81UniProt (B7WNX0)
Pfam (PF00856)
UniProt (by SIFTS) (Q4FZB7)
Homo sapiens (human)[histone H4]-lysine20 N-methyltransferase KMT5B
7L
(K)
ZINC IONnon-polymer65.41Chemie (ZN)
8M
(K)
S-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
PubChem (5136)
PubChem (34755)
PubChem (58633578)
PubChem (60038769)
PubChem (58766358)
PubChem (73897310)
PubChem (9865603)
PubChem (87224684)
PubChem (12312798)
PubChem (131697735)
PubChem (145712080)
PubChem (132988922)
PubChem (134692588)
PubChem (135030730)
PubChem (140459785)
PubChem (163046094)
Sequence modifications
A, E: 33 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Glu 34Gly 35engineered mutation
Ala 102Gly 103engineered mutation
B, F: 1 - 102 (UniProt: P62799)
PDBExternal DatabaseDetails
Ecx 20Lys 21modified residue
D, H: 31 - 125 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 32Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight214343.8
Non-Polymers*Number of molecules2
Total formula weight463.8
All*Total formula weight214807.6
*Water molecules are not included.

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PDB entries from 2026-04-01

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