7YJO
Cryo-EM structure of the monomeric atSPT-ORM1 (LCB2a-deltaN5) complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | atLCB1 | polymer | 420 | 46276.1 | 1 | UniProt (Q94IB8) Pfam (PF00155) In PDB | Arabidopsis thaliana (thale cress) | |
| 2 | B | Long chain base biosynthesis protein 2a | polymer | 485 | 53934.9 | 1 | UniProt (Q9LSZ9) Pfam (PF00155) In PDB | Arabidopsis thaliana (thale cress) | AtLCB2a,Long chain base biosynthesis protein 2,AtLCB2 |
| 3 | D | ORMDL family protein | polymer | 157 | 18220.3 | 1 | UniProt (Q9C5I0) Pfam (PF04061) In PDB | Arabidopsis thaliana (thale cress) | atORM1 |
| 4 | E | atLCB1 | polymer | 62 | 6949.4 | 1 | UniProt (Q94IB8) In PDB | Arabidopsis thaliana (thale cress) | AtLCB1,Protein EMBRYO DEFECTIVE 2779,Protein FUMONISIN B1 RESISTANT 11 |
| 5 | C | Transmembrane protein, putative (DUF3317) | polymer | 77 | 9442.7 | 1 | UniProt (A8MSB8) Pfam (PF11779) In PDB | Arabidopsis thaliana (thale cress) | |
| 6 | B | [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE | non-polymer | 336.2 | 1 | Chemie (PLS) | |||
| 7 | D | N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide | non-polymer | 650.1 | 1 | Chemie (Z1T) |
Sequence modifications
B: 6 - 489 (UniProt: Q9LSZ9)
C: 1 - 56 (UniProt: A8MSB8)
| PDB | External Database | Details |
|---|---|---|
| Met 5 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Met -20 | - | initiating methionine |
| Ala -19 | - | expression tag |
| Asp -18 | - | expression tag |
| Tyr -17 | - | expression tag |
| Lys -16 | - | expression tag |
| Asp -15 | - | expression tag |
| Asp -14 | - | expression tag |
| Asp -13 | - | expression tag |
| Asp -12 | - | expression tag |
| Lys -11 | - | expression tag |
| Ser -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Pro -8 | - | expression tag |
| Asp -7 | - | expression tag |
| Glu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Asp -4 | - | expression tag |
| Ala -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Arg 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 134823.4 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 986.3 | |
| All* | Total formula weight | 135809.7 |
