Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7YEL

TR-SFX MmCPDII-DNA complex: 25 us time-point collected in SACLA. Includes 25 us, dark, and extrapolated structure factors

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BDeoxyribodipyrimidine photo-lyasepolymer48255123.52UniProt (A0A0F8I5V2)
Pfam (PF00875)
UniProt (by SIFTS) (Q8PYK9)
In PDB
Methanosarcina mazeiDNA photolyase
2CCPD photolesion containing DNA after repairpolymer133943.61synthetic construct
3D, Fcomplementary oligonucleotide to the CPD containing DNApolymer144305.82synthetic construct
4ECPD photolesion containing DNA after repairpolymer123943.61synthetic construct
5A, BFLAVIN-ADENINE DINUCLEOTIDEnon-polymer785.52Chemie (FAD)
6ASULFATE IONnon-polymer96.11Chemie (SO4)
7waterwater18.0271Chemie (HOH)
Sequence modifications
A, B: 3 - 462 (UniProt: A0A0F8I5V2)
PDBExternal DatabaseDetails
Met -17-initiating methionine
Gly -16-expression tag
Ser -15-expression tag
Ser -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
His -9-expression tag
His -8-expression tag
Ser -7-expression tag
Ser -6-expression tag
Gly -5-expression tag
Leu -4-expression tag
Val -3-expression tag
Pro -2-expression tag
Arg -1-expression tag
Gly 0-expression tag
Ser 1-expression tag
His 2-expression tag
Thr 377Met 375engineered mutation
Ala 463-expression tag
Leu 464-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight126745.7
Non-Polymers*Number of molecules3
Total formula weight1667.2
All*Total formula weight128412.9
*Water molecules are not included.

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon