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7YDY

SARS-CoV-2 Spike (6P) in complex with 1 R1-32 Fab

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(A, B, C)
Spike glycoproteinpolymer1208133781.33UniProt (P0DTC2)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)
Severe acute respiratory syndrome coronavirus 2S glycoprotein,E2,Peplomer protein
2D
(H)
Heavy chain of R1-32 Fabpolymer22823840.71Homo sapiens
3E
(L)
Light chain of R1-32 Fabpolymer21422382.61Homo sapiens (human)
4F, G, H, I, J...
(D, E, F, G, I...)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.46In PDB
GlyTouCan (G42666HT)
5AA, BA, CA, DA, EA...
(B, C, A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.224Chemie (NAG)
Sequence modifications
A, B, C: 1 - 1208 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Gly 682Arg 682engineered mutation
Ser 683Arg 683engineered mutation
Ser 685Arg 685engineered mutation
Pro 817Phe 817engineered mutation
Pro 892Ala 892engineered mutation
Pro 899Ala 899engineered mutation
Pro 942Ala 942engineered mutation
Pro 986Lys 986engineered mutation
Pro 987Val 987engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight447567.3
BranchedNumber of molecules6
Total formula weight2546.4
Non-Polymers*Number of molecules24
Total formula weight5309.0
All*Total formula weight455422.7
*Water molecules are not included.

237735

PDB entries from 2025-06-18

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