7YCP
TR-SFX MmCPDII-DNA complex: 250 ps snapshot. Includes 250 ps, dark, and extrapolated structure factors
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Deoxyribodipyrimidine photo-lyase | polymer | 482 | 55123.5 | 2 | UniProt (A0A0F8I5V2) Pfam (PF00875) UniProt (by SIFTS) (Q8PYK9) In PDB | Methanosarcina mazei | DNA photolyase |
2 | C, E | CPD photolesion containing DNA | polymer | 13 | 4256.8 | 2 | synthetic construct | ||
3 | D, F | complementary oligonucleotide to the CPD containing DNA | polymer | 14 | 4305.8 | 2 | synthetic construct | ||
4 | A, B | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 2 | Chemie (FAD) | |||
5 | A | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
6 | water | water | 18.0 | 247 | Chemie (HOH) |
Sequence modifications
A, B: 3 - 462 (UniProt: A0A0F8I5V2)
PDB | External Database | Details |
---|---|---|
Met -17 | - | initiating methionine |
Gly -16 | - | expression tag |
Ser -15 | - | expression tag |
Ser -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
His -9 | - | expression tag |
His -8 | - | expression tag |
Ser -7 | - | expression tag |
Ser -6 | - | expression tag |
Gly -5 | - | expression tag |
Leu -4 | - | expression tag |
Val -3 | - | expression tag |
Pro -2 | - | expression tag |
Arg -1 | - | expression tag |
Gly 0 | - | expression tag |
Ser 1 | - | expression tag |
His 2 | - | expression tag |
Thr 377 | Met 375 | engineered mutation |
Ala 463 | - | expression tag |
Leu 464 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 127372.1 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 1667.2 | |
All* | Total formula weight | 129039.3 |