7YBK
SARS-CoV-2 B.1.620 variant spike (open state)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1266 | 140580.8 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | b, c, D, E, F... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 19 | In PDB GlyTouCan (G42666HT) | |||
| 3 | d, I, S | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
| 4 | e, f, J, K, T... | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G62182OO) | |||
| 5 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 26 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Ser 26 | Pro 26 | variant |
| Val 75 | Gly 75 | variant |
| Ile 76 | Thr 76 | variant |
| Ala 126 | Val 126 | conflict |
| - | Arg 246 | deletion |
| - | Ser 247 | deletion |
| - | Tyr 248 | deletion |
| - | Leu 249 | deletion |
| - | Thr 250 | deletion |
| - | Pro 251 | deletion |
| - | Gly 252 | deletion |
| Asn 253 | Asp 253 | variant |
| Asn 477 | Ser 477 | variant |
| Lys 484 | Glu 484 | variant |
| Tyr 501 | Asn 501 | variant |
| Gly 614 | Asp 614 | variant |
| Pro 942 | Ala 942 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 421742.3 | |
| Branched | Number of molecules | 28 |
| Total formula weight | 13294.5 | |
| Non-Polymers* | Number of molecules | 26 |
| Total formula weight | 5751.4 | |
| All* | Total formula weight | 440788.2 |
