7Y6T
Cryo-EM map of IPEC-J2 cell-derived PEDV PT52 S protein one D0-down and two D0-up
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, C, B) | Spike glycoprotein | polymer | 1402 | 153739.6 | 3 | UniProt (A0A1Y0DD46) Pfam (PF01600) Pfam (PF19209) Pfam (PF01601) | Porcine epidemic diarrhea virus | S glycoprotein,E2,Peplomer protein |
| 2 | BA, D, O (b, D, O) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 3 | DA, E, F, G, GA... (d, E, F, G, g...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 12 | In PDB GlyTouCan (G15407YE) | |||
| 4 | EA, H, I, IA, J... (e, H, I, i, J...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 10 | In PDB GlyTouCan (G42666HT) | |||
| 5 | M, Z (M, Z) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
| 6 | AA, KA, N (a, k, N) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 3 | In PDB GlyTouCan (G32152BH) | |||
| 7 | CA, FA, P, S (c, f, P, S) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 4 | In PDB GlyTouCan (G86851RC) | |||
| 8 | AB, BB, CB, LA, MA... (B, A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 18 | Chemie (NAG) |
Sequence modifications
A, C, B: 1 - 1327 (UniProt: A0A1Y0DD46)
| PDB | External Database | Details |
|---|---|---|
| Pro 1076 | Ile 1076 | engineered mutation |
| Pro 1077 | Leu 1077 | engineered mutation |
| Glu 1328 | - | expression tag |
| Phe 1329 | - | expression tag |
| Gly 1330 | - | expression tag |
| Ser 1331 | - | expression tag |
| Gly 1332 | - | expression tag |
| Gly 1333 | - | expression tag |
| Tyr 1334 | - | expression tag |
| Ile 1335 | - | expression tag |
| Pro 1336 | - | expression tag |
| Glu 1337 | - | expression tag |
| Ala 1338 | - | expression tag |
| Pro 1339 | - | expression tag |
| Arg 1340 | - | expression tag |
| Asp 1341 | - | expression tag |
| Gly 1342 | - | expression tag |
| Gln 1343 | - | expression tag |
| Ala 1344 | - | expression tag |
| Tyr 1345 | - | expression tag |
| Val 1346 | - | expression tag |
| Arg 1347 | - | expression tag |
| Lys 1348 | - | expression tag |
| Asp 1349 | - | expression tag |
| Gly 1350 | - | expression tag |
| Glu 1351 | - | expression tag |
| Trp 1352 | - | expression tag |
| Val 1353 | - | expression tag |
| Leu 1354 | - | expression tag |
| Leu 1355 | - | expression tag |
| Ser 1356 | - | expression tag |
| Thr 1357 | - | expression tag |
| Phe 1358 | - | expression tag |
| Leu 1359 | - | expression tag |
| Lys 1360 | - | expression tag |
| Gly 1361 | - | expression tag |
| Gln 1362 | - | expression tag |
| Asp 1363 | - | expression tag |
| Asn 1364 | - | expression tag |
| Ser 1365 | - | expression tag |
| Ala 1366 | - | expression tag |
| Asp 1367 | - | expression tag |
| Ile 1368 | - | expression tag |
| Gln 1369 | - | expression tag |
| His 1370 | - | expression tag |
| Ser 1371 | - | expression tag |
| Gly 1372 | - | expression tag |
| Arg 1373 | - | expression tag |
| Pro 1374 | - | expression tag |
| Leu 1375 | - | expression tag |
| Glu 1376 | - | expression tag |
| Ser 1377 | - | expression tag |
| Arg 1378 | - | expression tag |
| Gly 1379 | - | expression tag |
| Pro 1380 | - | expression tag |
| Phe 1381 | - | expression tag |
| Glu 1382 | - | expression tag |
| Gln 1383 | - | expression tag |
| Lys 1384 | - | expression tag |
| Leu 1385 | - | expression tag |
| Ile 1386 | - | expression tag |
| Ser 1387 | - | expression tag |
| Glu 1388 | - | expression tag |
| Glu 1389 | - | expression tag |
| Asp 1390 | - | expression tag |
| Leu 1391 | - | expression tag |
| Asn 1392 | - | expression tag |
| Met 1393 | - | expression tag |
| His 1394 | - | expression tag |
| Thr 1395 | - | expression tag |
| Gly 1396 | - | expression tag |
| His 1397 | - | expression tag |
| His 1398 | - | expression tag |
| His 1399 | - | expression tag |
| His 1400 | - | expression tag |
| His 1401 | - | expression tag |
| His 1402 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 461218.9 | |
| Branched | Number of molecules | 34 |
| Total formula weight | 18823.5 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 3981.7 | |
| All* | Total formula weight | 484024.1 |
