7Y5B
Cryo-EM structure of F-ATP synthase from Mycolicibacterium smegmatis (rotational state 1)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | ATP synthase subunit alpha | polymer | 548 | 58951.5 | 2 | UniProt (A0R202) Pfam (PF02874) Pfam (PF00006) Pfam (PF00306) In PDB | Mycolicibacterium smegmatis | ATP synthase F1 sector subunit alpha,F-ATPase subunit alpha |
| 2 | C | ATP synthase subunit alpha | polymer | 548 | 58509.2 | 1 | UniProt (A0R202) Pfam (PF02874) Pfam (PF00006) Pfam (PF00306) In PDB | Mycolicibacterium smegmatis | ATP synthase F1 sector subunit alpha,F-ATPase subunit alpha |
| 3 | D, E, F | ATP synthase subunit beta | polymer | 481 | 52499.3 | 3 | UniProt (A0R200) Pfam (PF22919) Pfam (PF02874) Pfam (PF00006) In PDB | Mycolicibacterium smegmatis | ATP synthase F1 sector subunit beta,F-ATPase subunit beta |
| 4 | G | ATP synthase gamma chain | polymer | 307 | 33439.8 | 1 | UniProt (A0R201) Pfam (PF00231) In PDB | Mycolicibacterium smegmatis | ATP synthase F1 sector gamma subunit,F-ATPase gamma subunit |
| 5 | H | ATP synthase epsilon chain | polymer | 121 | 13277.7 | 1 | UniProt (A0R1Z9) Pfam (PF02823) In PDB | Mycolicibacterium smegmatis | ATP synthase F1 sector epsilon subunit,F-ATPase epsilon subunit |
| 6 | a | ATP synthase subunit a | polymer | 252 | 27568.5 | 1 | UniProt (A0R206) Pfam (PF00119) In PDB | Mycolicibacterium smegmatis | ATP synthase F0 sector subunit a,F-ATPase subunit 6 |
| 7 | b | ATP synthase subunit b | polymer | 170 | 17636.7 | 1 | UniProt (A0R204) Pfam (PF00430) In PDB | Mycolicibacterium smegmatis | ATP synthase F(0) sector subunit b,ATPase subunit I,F-type ATPase subunit b,F-ATPase subunit b |
| 8 | d | ATP synthase subunit b-delta | polymer | 445 | 47504.7 | 1 | UniProt (A0R203) Pfam (PF00430) Pfam (PF00213) In PDB | Mycolicibacterium smegmatis | |
| 9 | 1, 2, 3, 4, 5... | ATP synthase subunit c | polymer | 86 | 8598.0 | 9 | UniProt (A0R205) Pfam (PF00137) In PDB | Mycolicibacterium smegmatis | ATP synthase F(0) sector subunit c,F-type ATPase subunit c,F-ATPase subunit c,Lipid-binding protein |
| 10 | E, F, A, B, C | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 5 | Chemie (ATP) | |||
| 11 | E, F, A, B, C | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
| 12 | D | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) |
Sequence modifications
C: 1 - 548 (UniProt: A0R202)
D, E, F: 2 - 475 (UniProt: A0R200)
| PDB | External Database | Details |
|---|---|---|
| Unk 1 | Met 1 | conflict |
| Unk 2 | Ala 2 | conflict |
| Unk 3 | Glu 3 | conflict |
| Unk 4 | Leu 4 | conflict |
| Unk 5 | Thr 5 | conflict |
| Unk 6 | Ile 6 | conflict |
| Unk 7 | Ser 7 | conflict |
| Unk 8 | Ala 8 | conflict |
| Unk 9 | Ala 9 | conflict |
| Unk 10 | Asp 10 | conflict |
| Unk 11 | Ile 11 | conflict |
| Unk 12 | Glu 12 | conflict |
| Unk 13 | Gly 13 | conflict |
| Unk 14 | Ala 14 | conflict |
| Unk 15 | Ile 15 | conflict |
| Unk 16 | Glu 16 | conflict |
| Unk 17 | Asp 17 | conflict |
| Unk 18 | Tyr 18 | conflict |
| Unk 19 | Val 19 | conflict |
| Unk 20 | Ser 20 | conflict |
| Unk 21 | Ser 21 | conflict |
| Unk 22 | Phe 22 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met -5 | - | initiating methionine |
| His -4 | - | expression tag |
| His -3 | - | expression tag |
| His -2 | - | expression tag |
| His -1 | - | expression tag |
| His 0 | - | expression tag |
| His 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 550719.5 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 3084.6 | |
| All* | Total formula weight | 553804.1 |
