7Y0W
Local structure of BD55-5514 and BD55-5840 Fab and Omicron BA.1 RBD complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | BD55-5514H | polymer | 123 | 13237.8 | 1 | Homo sapiens | ||
| 2 | B (B) | BD55-5514L | polymer | 107 | 11750.9 | 1 | Homo sapiens | ||
| 3 | C (H) | BD55-5840H | polymer | 119 | 13136.4 | 1 | Homo sapiens | ||
| 4 | D (L) | BD55-5840L | polymer | 109 | 11636.0 | 1 | Homo sapiens | ||
| 5 | E (R) | Spike protein S1 | polymer | 193 | 21983.9 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Homo sapiens (human) | Omicron BA.1 RBD |
| 6 | F (X) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) |
Sequence modifications
R: 335 - 527 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asp 339 | Gly 339 | variant |
| Leu 371 | Ser 371 | variant |
| Pro 373 | Ser 373 | variant |
| Phe 375 | Ser 375 | variant |
| Asn 417 | Lys 417 | variant |
| Lys 440 | Asn 440 | variant |
| Ser 446 | Gly 446 | variant |
| Asn 477 | Ser 477 | variant |
| Lys 478 | Thr 478 | variant |
| Ala 484 | Glu 484 | variant |
| Arg 493 | Gln 493 | variant |
| Ser 496 | Gly 496 | variant |
| Arg 498 | Gln 498 | variant |
| Tyr 501 | Asn 501 | variant |
| His 505 | Tyr 505 | variant |
| Lys 527 | Pro 527 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 71744.9 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 570.5 | |
| All* | Total formula weight | 72315.5 |
