7Y0N
SARS-CoV-2 WT Spike in complex with R15 Fab and P14 Nanobody
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, D | Spike glycoprotein | polymer | 1147 | 127076.0 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | C, E, F | Heavy chain of R15-F7 | polymer | 116 | 12638.1 | 3 | Homo sapiens | ||
| 3 | G, H, I | P14 Nanobody | polymer | 123 | 13461.8 | 3 | Vicugna pacos | ||
| 4 | J, K, L | Light chain of R15-F7 | polymer | 108 | 11675.9 | 3 | Homo sapiens | ||
| 5 | a, M, N, O, P... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
| 6 | D, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) |
Sequence modifications
A, B, D: 1 - 1147 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Glu 607 | Gln 607 | conflict |
| Phe 621 | Pro 621 | conflict |
| Pro 986 | Lys 986 | engineered mutation |
| Pro 987 | Val 987 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 494555.3 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 6366.0 | |
| Non-Polymers* | Number of molecules | 33 |
| Total formula weight | 7299.9 | |
| All* | Total formula weight | 508221.2 |
