7XVM
Crystal Structure of Nucleosome-H5 Linker Histone Assembly (sticky-169a DNA fragment)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E, K, O | Histone H3.1 | polymer | 138 | 15581.3 | 4 | UniProt (P68431) Pfam (PF00125) In PDB | Homo sapiens (human) | Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l |
2 | B, F, L, P | Histone H4 | polymer | 105 | 11538.6 | 4 | UniProt (P62805) Pfam (PF15511) In PDB | Homo sapiens (human) | |
3 | C, G, M, Q | Histone H2A type 1-B/E | polymer | 132 | 14309.7 | 4 | UniProt (P04908) Pfam (PF00125) Pfam (PF16211) In PDB | Homo sapiens (human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
4 | D, H, N, R | Histone H2B type 1-J | polymer | 128 | 14079.4 | 4 | UniProt (P06899) Pfam (PF00125) In PDB | Homo sapiens (human) | Histone H2B.1,Histone H2B.r,H2B/r |
5 | I, S | DNA (169-MER) | polymer | 169 | 52173.3 | 2 | synthetic construct | ||
6 | J, T | DNA (169-MER) | polymer | 169 | 52164.3 | 2 | synthetic construct | ||
7 | U, V | Histone H5 | polymer | 190 | 20758.9 | 2 | UniProt (P02259) Pfam (PF00538) In PDB | Gallus gallus (chicken) | |
8 | I, J, S, T, C | CALCIUM ION | non-polymer | 40.1 | 18 | Chemie (CA) | |||
9 | M, C, H | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
10 | I, T | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
11 | water | water | 18.0 | 11 | Chemie (HOH) |
Sequence modifications
A, E, K, O: 0 - 135 (UniProt: P68431)
B, F, L, P: 0 - 102 (UniProt: P62805)
C, G, M, Q: 0 - 129 (UniProt: P04908)
D, H, N, R: 0 - 125 (UniProt: P06899)
U, V: 2 - 190 (UniProt: P02259)
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 22 |
Total formula weight | 472228.5 | |
Non-Polymers* | Number of molecules | 23 |
Total formula weight | 906.0 | |
All* | Total formula weight | 473134.4 |