7XT7
RNA polymerase II elongation complex transcribing a nucleosome (EC49B)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA-directed RNA polymerase subunit | polymer | 1743 | 194107.4 | 1 | UniProt (C4R4Y0) Pfam (PF04997) Pfam (PF05001) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) In PDB | Komagataella phaffii | |
2 | B | DNA-directed RNA polymerase subunit beta | polymer | 1227 | 139746.1 | 1 | UniProt (C4QZQ7) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) In PDB | Komagataella phaffii | |
3 | C | RNA polymerase II third largest subunit B44, part of central core | polymer | 304 | 34216.3 | 1 | UniProt (C4R7L2) Pfam (PF01193) Pfam (PF01000) In PDB | Komagataella phaffii | |
4 | D | RNA polymerase II subunit B32 | polymer | 186 | 20623.0 | 1 | UniProt (C4R2U9) Pfam (PF03874) In PDB | Komagataella phaffii | |
5 | E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | polymer | 214 | 24962.7 | 1 | UniProt (C4R3P8) Pfam (PF03871) Pfam (PF01191) In PDB | Komagataella phaffii | |
6 | F | RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III | polymer | 155 | 17803.6 | 1 | UniProt (C4R1V1) Pfam (PF01192) In PDB | Komagataella phaffii | |
7 | G | RNA polymerase II subunit | polymer | 171 | 18802.6 | 1 | UniProt (C4R9A1) Pfam (PF03876) Pfam (PF00575) In PDB | Komagataella phaffii | |
8 | H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 145 | 16249.2 | 1 | UniProt (C4R273) Pfam (PF03870) In PDB | Komagataella phaffii | |
9 | I | DNA-directed RNA polymerase subunit | polymer | 115 | 13612.3 | 1 | UniProt (F2QPE6) Pfam (PF02150) Pfam (PF01096) In PDB | Komagataella phaffii | |
10 | J | RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III | polymer | 72 | 8554.1 | 1 | UniProt (C4R009) Pfam (PF01194) In PDB | Komagataella phaffii | |
11 | K | RNA polymerase II subunit B12.5 | polymer | 118 | 13832.9 | 1 | UniProt (C4R3Z5) Pfam (PF13656) In PDB | Komagataella phaffii | |
12 | L | RNA polymerase subunit ABC10-alpha | polymer | 72 | 7862.0 | 1 | UniProt (F2QMI1) Pfam (PF03604) In PDB | Komagataella phaffii | |
13 | M | Transcription elongation factor 1 homolog | polymer | 113 | 12606.9 | 1 | UniProt (C4QZ45) Pfam (PF05129) In PDB | Komagataella phaffii | |
14 | N | DNA (198-MER) | polymer | 198 | 61373.9 | 1 | synthetic construct | ||
15 | P | RNA (5'-R(P*GP*AP*CP*CP*CP*GP*GP*GP*UP*GP*UP*CP*UP*UP*CP*CP*CP*CP*A)-3') | polymer | 19 | 6006.6 | 1 | synthetic construct | ||
16 | T | DNA (198-MER) | polymer | 198 | 60875.0 | 1 | synthetic construct | ||
17 | V | Transcription elongation factor SPT4 | polymer | 108 | 12039.6 | 1 | UniProt (C4R0E6) Pfam (PF06093) In PDB | Komagataella phaffii | |
18 | W | Transcription elongation factor SPT5 | polymer | 911 | 101459.4 | 1 | UniProt (C4R370) Pfam (PF11942) Pfam (PF03439) Pfam (PF00467) Pfam (PF12815) In PDB | Komagataella phaffii | Chromatin Elongation factor SPT5,Transcription elongation factor spt5 |
19 | m | Transcription elongation factor Spt6 | polymer | 1503 | 173241.6 | 1 | UniProt (C4R7H2) Pfam (PF14632) Pfam (PF14641) Pfam (PF22706) Pfam (PF14639) Pfam (PF14635) Pfam (PF21710) Pfam (PF14633) In PDB | Komagataella phaffii | |
20 | n | Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II | polymer | 417 | 46907.8 | 1 | UniProt (C4R7L8) Pfam (PF08711) In PDB | Komagataella phaffii | |
21 | q | Component of the Paf1p complex | polymer | 1084 | 124979.0 | 1 | UniProt (C4R6B2) Pfam (PF13432) In PDB | Komagataella phaffii | |
22 | r | RNAPII-associated chromatin remodeling Paf1 complex subunit | polymer | 544 | 62301.2 | 1 | UniProt (F2QQ42) Pfam (PF03126) In PDB | Komagataella phaffii | |
23 | u | Leo1 | polymer | 459 | 52387.7 | 1 | UniProt (C4R3K1) Pfam (PF04004) In PDB | Komagataella phaffii | |
24 | v | RNAP II-associated protein | polymer | 396 | 46046.0 | 1 | UniProt (C4R997) Pfam (PF03985) In PDB | Komagataella phaffii | |
25 | x | Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p | polymer | 395 | 44760.7 | 1 | UniProt (C4R1E6) Pfam (PF05179) In PDB | Komagataella phaffii | |
26 | a, e | Histone H3.3 | polymer | 139 | 15643.3 | 2 | UniProt (P84243) Pfam (PF00125) In PDB | Homo sapiens (human) | |
27 | b, f | Histone H4 | polymer | 106 | 11676.7 | 2 | UniProt (P62805) Pfam (PF15511) In PDB | Homo sapiens (human) | |
28 | c, g | Histone H2A type 1-B/E | polymer | 133 | 14447.8 | 2 | UniProt (P04908) Pfam (PF00125) Pfam (PF16211) In PDB | Homo sapiens (human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
29 | d, h | Histone H2B type 1-J | polymer | 129 | 14217.5 | 2 | UniProt (P06899) Pfam (PF00125) In PDB | Homo sapiens (human) | Histone H2B.1,Histone H2B.r,H2B/r |
30 | j | FACT complex subunit | polymer | 1008 | 115220.7 | 1 | UniProt (F2QPX0) Pfam (PF14826) Pfam (PF00557) Pfam (PF08644) Pfam (PF08512) In PDB | Komagataella phaffii | |
31 | k | FACT complex subunit POB3 | polymer | 531 | 60292.3 | 1 | UniProt (F2QNN8) Pfam (PF17292) Pfam (PF03531) Pfam (PF21103) Pfam (PF08512) In PDB | Komagataella phaffii | |
32 | A, B, C, I, J... | ZINC ION | non-polymer | 65.4 | 10 | Chemie (ZN) | |||
33 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
M: 1 - 110 (UniProt: C4QZ45)
V: 8 - 114 (UniProt: C4R0E6)
W: 1 - 908 (UniProt: C4R370)
m: 1 - 1500 (UniProt: C4R7H2)
n: 1 - 414 (UniProt: C4R7L8)
q: 1 - 1044 (UniProt: C4R6B2)
r: 1 - 514 (UniProt: F2QQ42)
u: 1 - 429 (UniProt: C4R3K1)
v: 1 - 393 (UniProt: C4R997)
x: 1 - 365 (UniProt: C4R1E6)
a, e: 0 - 135 (UniProt: P84243)
b, f: 0 - 102 (UniProt: P62805)
c, g: 0 - 129 (UniProt: P04908)
d, h: -3 - 122 (UniProt: P06899)
j: 1 - 1005 (UniProt: F2QPX0)
k: 1 - 528 (UniProt: F2QNN8)
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 7 | - | initiating methionine |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -39 | - | initiating methionine |
Lys -38 | - | expression tag |
Asp -37 | - | expression tag |
His -36 | - | expression tag |
Leu -35 | - | expression tag |
Ile -34 | - | expression tag |
His -33 | - | expression tag |
Asn -32 | - | expression tag |
His -31 | - | expression tag |
His -30 | - | expression tag |
Lys -29 | - | expression tag |
His -28 | - | expression tag |
Glu -27 | - | expression tag |
His -26 | - | expression tag |
Ala -25 | - | expression tag |
His -24 | - | expression tag |
Ala -23 | - | expression tag |
Glu -22 | - | expression tag |
His -21 | - | expression tag |
Asp -20 | - | expression tag |
Tyr -19 | - | expression tag |
Lys -18 | - | expression tag |
Asp -17 | - | expression tag |
Asp -16 | - | expression tag |
Asp -15 | - | expression tag |
Asp -14 | - | expression tag |
Lys -13 | - | expression tag |
Glu -12 | - | expression tag |
His -11 | - | expression tag |
Leu -10 | - | expression tag |
Tyr -9 | - | expression tag |
Phe -8 | - | expression tag |
Gln -7 | - | expression tag |
Gly -6 | - | expression tag |
Ser -5 | - | expression tag |
Ser -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Ser -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -29 | - | initiating methionine |
Lys -28 | - | expression tag |
Asp -27 | - | expression tag |
His -26 | - | expression tag |
Leu -25 | - | expression tag |
Ile -24 | - | expression tag |
His -23 | - | expression tag |
Asn -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
Lys -19 | - | expression tag |
His -18 | - | expression tag |
Glu -17 | - | expression tag |
His -16 | - | expression tag |
Ala -15 | - | expression tag |
His -14 | - | expression tag |
Ala -13 | - | expression tag |
Glu -12 | - | expression tag |
His -11 | - | expression tag |
Leu -10 | - | expression tag |
Tyr -9 | - | expression tag |
Phe -8 | - | expression tag |
Gln -7 | - | expression tag |
Gly -6 | - | expression tag |
Ser -5 | - | expression tag |
Ser -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Ser -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -29 | - | initiating methionine |
Lys -28 | - | expression tag |
Asp -27 | - | expression tag |
His -26 | - | expression tag |
Leu -25 | - | expression tag |
Ile -24 | - | expression tag |
His -23 | - | expression tag |
Asn -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
Lys -19 | - | expression tag |
His -18 | - | expression tag |
Glu -17 | - | expression tag |
His -16 | - | expression tag |
Ala -15 | - | expression tag |
His -14 | - | expression tag |
Ala -13 | - | expression tag |
Glu -12 | - | expression tag |
His -11 | - | expression tag |
Leu -10 | - | expression tag |
Tyr -9 | - | expression tag |
Phe -8 | - | expression tag |
Gln -7 | - | expression tag |
Gly -6 | - | expression tag |
Ser -5 | - | expression tag |
Ser -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Ser -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
Ala 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -29 | - | initiating methionine |
Lys -28 | - | expression tag |
Asp -27 | - | expression tag |
His -26 | - | expression tag |
Leu -25 | - | expression tag |
Ile -24 | - | expression tag |
His -23 | - | expression tag |
Asn -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
Lys -19 | - | expression tag |
His -18 | - | expression tag |
Glu -17 | - | expression tag |
His -16 | - | expression tag |
Ala -15 | - | expression tag |
His -14 | - | expression tag |
Ala -13 | - | expression tag |
Glu -12 | - | expression tag |
His -11 | - | expression tag |
Leu -10 | - | expression tag |
Tyr -9 | - | expression tag |
Phe -8 | - | expression tag |
Gln -7 | - | expression tag |
Gly -6 | - | expression tag |
Ser -5 | - | expression tag |
Ser -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Ser -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -6 | - | expression tag |
Ser -5 | - | expression tag |
His -4 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 35 |
Total formula weight | 1602841.3 | |
Non-Polymers* | Number of molecules | 11 |
Total formula weight | 678.4 | |
All* | Total formula weight | 1603519.7 |