7XNO
Cryo-EM structure of the bacteriocin-receptor-immunity ternary complex from Lactobacillus sakei
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, G | Bacteriocin sakacin-A | polymer | 41 | 4312.9 | 3 | UniProt (P0A310) Pfam (PF01721) In PDB | Latilactobacillus sakei L45 | |
2 | Y, D, H | Mannose permease IIC component | polymer | 268 | 27467.7 | 3 | UniProt (A0A094YUG1) Pfam (PF03609) UniProt (by SIFTS) (Q38YH6) In PDB | Latilactobacillus sakei L45 | Mannose/fructose/sorbose family PTS transporter subunit IIC,PTS mannose/fructose/sorbose transporter subunit IIC,Phosphotransferase system (PTS) fructose-specific enzyme IIC component |
3 | Z, E, I | Mannose permease IID component | polymer | 303 | 33332.1 | 3 | UniProt (A0A094XZA1) Pfam (PF03613) UniProt (by SIFTS) (Q38YH5) In PDB | Latilactobacillus sakei L45 | PTS mannose family transporter subunit IID,Phosphotransferase system (PTS) fructose-specific enzyme IID component |
4 | B, F, J | Sakacin-A immunity factor | polymer | 119 | 13747.9 | 3 | UniProt (Q48864) In PDB | Latilactobacillus sakei L45 | |
5 | Z, E, I | alpha-D-mannopyranose | non-polymer | 180.2 | 3 | Chemie (MAN) |
Sequence modifications
B, F, J: 1 - 90 (UniProt: Q48864)
PDB | External Database | Details |
---|---|---|
Met -28 | - | initiating methionine |
Lys -27 | - | expression tag |
His -26 | - | expression tag |
His -25 | - | expression tag |
His -24 | - | expression tag |
His -23 | - | expression tag |
His -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
Gly -19 | - | expression tag |
Ala -18 | - | expression tag |
Ala -17 | - | expression tag |
Gly -16 | - | expression tag |
Thr -15 | - | expression tag |
Ser -14 | - | expression tag |
Leu -13 | - | expression tag |
Tyr -12 | - | expression tag |
Lys -11 | - | expression tag |
Lys -10 | - | expression tag |
Ala -9 | - | expression tag |
Gly -8 | - | expression tag |
Glu -7 | - | expression tag |
Asn -6 | - | expression tag |
Leu -5 | - | expression tag |
Tyr -4 | - | expression tag |
Phe -3 | - | expression tag |
Gln -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 236581.8 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 540.5 | |
All* | Total formula weight | 237122.3 |