7XMA
Crystal structure of Bovine heart cytochrome c oxidase, apo structure with DMSO
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, N | Cytochrome c oxidase subunit 1 | polymer | 514 | 57093.9 | 2 | UniProt (P00396) Pfam (PF00115) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide I |
2 | B, O | Cytochrome c oxidase subunit 2,Cytochrome c oxidase subunit 1 | polymer | 581 | 65935.9 | 2 | UniProt (P68530) UniProt (Q6EMS9) Pfam (PF02790) Pfam (PF00116) Pfam (PF00115) UniProt (by SIFTS) (P00396) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide II,Cytochrome c oxidase polypeptide I |
3 | C, P | Cytochrome c oxidase subunit 3 | polymer | 261 | 29971.6 | 2 | UniProt (P00415) Pfam (PF00510) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide III |
4 | D, Q | Cytochrome c oxidase subunit 4 isoform 1 | polymer | 147 | 17179.6 | 2 | UniProt (P00423) Pfam (PF02936) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide IV |
5 | E, R | Cytochrome c oxidase subunit 5A | polymer | 109 | 12453.1 | 2 | UniProt (P00426) Pfam (PF02284) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide Va |
6 | F, S | Cytochrome c oxidase subunit 5B, mitochondrial | polymer | 98 | 10684.0 | 2 | UniProt (P00428) Pfam (PF01215) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide VIa,Cytochrome c oxidase polypeptide Vb |
7 | G, T | Cytochrome c oxidase subunit 6A2, mitochondrial | polymer | 84 | 9532.7 | 2 | UniProt (P07471) Pfam (PF02046) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide VIa-heart,COXVIAH,Cytochrome c oxidase polypeptide VIb |
8 | H, U | Cytochrome c oxidase subunit 6B1 | polymer | 85 | 10039.2 | 2 | UniProt (P00429) Pfam (PF02297) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide VII |
9 | I, V | Cytochrome c oxidase subunit 6C | polymer | 73 | 8495.0 | 2 | UniProt (P04038) Pfam (PF02937) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide VIc,Cytochrome c oxidase subunit STA |
10 | J, W | Cytochrome c oxidase subunit 7A1 | polymer | 59 | 6682.7 | 2 | UniProt (P07470) Pfam (PF02238) In PDB | Bos taurus (cattle) | Cytochrome c oxidase subunit VIIIc,VIIIC |
11 | K, X | Cytochrome c oxidase subunit 7B | polymer | 56 | 6365.2 | 2 | UniProt (P13183) Pfam (PF05392) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide VIIb |
12 | L, Y | Cytochrome c oxidase subunit 7C, mitochondrial | polymer | 47 | 5449.4 | 2 | UniProt (P00430) Pfam (PF02935) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide VIIIA |
13 | M, Z | Cytochrome c oxidase subunit 8B | polymer | 46 | 4967.8 | 2 | UniProt (P10175) Pfam (PF02285) In PDB | Bos taurus (cattle) | Cytochrome c oxidase polypeptide VIII-heart |
14 | A, N | HEME-A | non-polymer | 852.8 | 4 | Chemie (HEA) | |||
15 | A, N | COPPER (II) ION | non-polymer | 63.5 | 2 | Chemie (CU) | |||
16 | A, N | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
17 | A, N | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
18 | A, N | PEROXIDE ION | non-polymer | 32.0 | 2 | Chemie (PER) | |||
19 | A, N, C, P, D | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | non-polymer | 749.0 | 8 | Chemie (PGV) | |||
20 | A, N, D, Q, L... | TRISTEAROYLGLYCEROL | non-polymer | 891.5 | 6 | Chemie (TGL) | |||
21 | B, O | DINUCLEAR COPPER ION | non-polymer | 127.1 | 2 | Chemie (CUA) | |||
22 | C, P, G, T | CARDIOLIPIN | non-polymer | 1464.0 | 4 | Chemie (CDL) | |||
23 | C, P, T, G | CHOLIC ACID | non-polymer | 408.6 | 6 | Chemie (CHD) | |||
24 | P, C, G, T | (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE | non-polymer | 768.1 | 6 | Chemie (PEK) | |||
25 | O, E | (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE | non-polymer | 759.1 | 2 | Chemie (PSC) | |||
26 | F, S | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
27 | J, W, M, Z | DECYL-BETA-D-MALTOPYRANOSIDE | non-polymer | 482.6 | 4 | Chemie (DMU) | |||
28 | water | water | 18.0 | 2486 | Chemie (HOH) |
Sequence modifications
B, O: 1 - 227 (UniProt: P68530)
B, O: 228 - 581 (UniProt: Q6EMS9)
C, P: 1 - 261 (UniProt: P00415)
B, O: 228 - 581 (UniProt: Q6EMS9)
C, P: 1 - 261 (UniProt: P00415)
PDB | External Database | Details |
---|---|---|
Gly 238 | Ala 238 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 26 |
Total formula weight | 489700.3 | |
Non-Polymers* | Number of molecules | 52 |
Total formula weight | 31787.3 | |
All* | Total formula weight | 521487.6 |