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7XD0

cryo-EM structure of H2BK34ub nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, H
(F, B)
Histone H4polymer839409.12UniProt (A0A672PXK1)
Pfam (PF15511)
UniProt (by SIFTS) (P62805)
Homo sapiens (human)
2B, G
(G, C)
Histone H2Apolymer10811865.92UniProt (Q08AJ9)
Pfam (PF00125)
Pfam (PF16211)
UniProt (by SIFTS) (P04908)
Homo sapiens (human)
3C, F
(H, D)
Histone H2B type 1-Kpolymer9210233.72UniProt (Q2M2T1)
Pfam (PF00125)
synthetic construct
4D, E
(E, A)
Histone domain-containing proteinpolymer9911631.62UniProt (S4RAZ3)
Pfam (PF00125)
UniProt (by SIFTS) (Q71DI3)
Homo sapiens (human)
5I
(I)
DNA (146-MER)polymer14644825.61synthetic construct
6J
(J)
DNA (146-MER)polymer14645305.91synthetic construct
7K, L
(L, K)
Ubiquitin-60S ribosomal protein L40polymer768576.82UniProt (A0A2H6N1E9)
Pfam (PF00240)
UniProt (by SIFTS) (P62987)
synthetic construct
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight193565.6
All*Total formula weight193565.6
*Water molecules are not included.

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PDB entries from 2025-06-11

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