7X75

Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with three Zur dimers

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, N (A, B, S)	DNA-directed RNA polymerase subunit alpha	polymer	340	36734.6	3	UniProt (A0A6G2M9E1)	Streptomyces coelicolor A3(2)	RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
2	C (C)	DNA-directed RNA polymerase subunit beta	polymer	1161	128644.9	1	UniProt (Q9L0L0) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) Pfam (PF04560)	Streptomyces coelicolor A3(2)	RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
3	D (D)	DNA-directed RNA polymerase subunit beta'	polymer	1307	145912.2	1	UniProt (Q8CJT1) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04997) Pfam (PF00623)	Streptomyces coelicolor A3(2)	RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
4	E (E)	DNA-directed RNA polymerase subunit omega	polymer	90	9716.9	1	UniProt (Q9KXS1) Pfam (PF01192)	Streptomyces coelicolor A3(2)	RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
5	F (F)	RNA polymerase principal sigma factor HrdB	polymer	531	58189.0	1	UniProt (P18183) Pfam (PF00140) Pfam (PF04542) Pfam (PF04539) Pfam (PF04545)	Streptomyces coelicolor A3(2)	RNA polymerase sigma factor SigA
6	G, H, I, J, K... (G, H, K, L, M...)	Putative metal uptake regulation protein	polymer	159	16904.8	6	UniProt (Q9L2H5) Pfam (PF01475)	Streptomyces coelicolor A3(2)	Zur
7	M (O)	DNA (84-MER)	polymer	84	25808.4	1	GenBank (24418971)	Streptomyces coelicolor A3(2)
8	O (P)	DNA (84-MER)	polymer	84	26017.6	1		Streptomyces coelicolor A3(2)
9	P (D)	MAGNESIUM ION	non-polymer		24.3	1	Chemie (MG)
10	AA, BA, CA, DA, EA... (K, L, M, N, D...)	ZINC ION	non-polymer		65.4	20	Chemie (ZN)

Sequence modifications

D: 1 - 1299 (UniProt: Q8CJT1)

PDB	External Database	Details
His 1300	-	expression tag
His 1301	-	expression tag
His 1302	-	expression tag
His 1303	-	expression tag
His 1304	-	expression tag
His 1305	-	expression tag
His 1306	-	expression tag
His 1307	-	expression tag

F: 1 - 511 (UniProt: P18183)

PDB	External Database	Details
Met -19	-	initiating methionine
Gly -18	-	expression tag
Ser -17	-	expression tag
Ser -16	-	expression tag
His -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
His -11	-	expression tag
His -10	-	expression tag
Ser -9	-	expression tag
Ser -8	-	expression tag
Gly -7	-	expression tag
Leu -6	-	expression tag
Val -5	-	expression tag
Pro -4	-	expression tag
Arg -3	-	expression tag
Gly -2	-	expression tag
Ser -1	-	expression tag
His 0	-	expression tag

G, H, K, L, M, N: 1 - 139 (UniProt: Q9L2H5)

PDB	External Database	Details
Met -19	-	initiating methionine
Gly -18	-	expression tag
Ser -17	-	expression tag
Ser -16	-	expression tag
His -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
His -11	-	expression tag
His -10	-	expression tag
Ser -9	-	expression tag
Ser -8	-	expression tag
Gly -7	-	expression tag
Leu -6	-	expression tag
Val -5	-	expression tag
Pro -4	-	expression tag
Arg -3	-	expression tag
Gly -2	-	expression tag
Ser -1	-	expression tag
His 0	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	15
	Total formula weight	605922.0
Non-Polymers*	Number of molecules	21
	Total formula weight	1332.5
All*	Total formula weight	607254.5

*Water molecules are not included.