7X66
SARS-CoV-2-Omicron-RBD and BD-236-GWP/P-VK antibody complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | BD-236 Fab heavy chain | polymer | 223 | 23412.3 | 1 | Homo sapiens | ||
| 2 | B (L) | BD-236 Fab light chain | polymer | 215 | 23197.8 | 1 | Homo sapiens | ||
| 3 | C (R) | Spike protein S1 | polymer | 210 | 23936.1 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
| 4 | D, E, F (H, L, R) | water | water | 18.0 | 309 | Chemie (HOH) |
Sequence modifications
R: 319 - 528 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asp 339 | Gly 339 | variant |
| Leu 371 | Ser 371 | variant |
| Pro 373 | Ser 373 | variant |
| Phe 375 | Ser 375 | variant |
| Asn 417 | Lys 417 | variant |
| Lys 440 | Asn 440 | variant |
| Ser 446 | Gly 446 | variant |
| Asn 477 | Ser 477 | variant |
| Lys 478 | Thr 478 | variant |
| Ala 484 | Glu 484 | variant |
| Arg 493 | Gln 493 | variant |
| Ser 496 | Gly 496 | variant |
| Arg 498 | Gln 498 | variant |
| Tyr 501 | Asn 501 | variant |
| His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 70546.2 | |
| All* | Total formula weight | 70546.2 |
