7X1M
The complex structure of Omicron BA.1 RBD with BD604, S309,and S304
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | S309 Fab heavy chain | polymer | 230 | 24573.5 | 1 | Homo sapiens (human) | ||
| 2 | B (B) | S309 Fab light chain | polymer | 214 | 23204.7 | 1 | Homo sapiens (human) | ||
| 3 | C (C) | BD-604 Fab heavy chain | polymer | 222 | 23352.2 | 1 | Homo sapiens (human) | ||
| 4 | D (D) | BD-604 Fab light chain | polymer | 214 | 23304.8 | 1 | Homo sapiens (human) | ||
| 5 | E (H) | S304 Fab haavy chain | polymer | 223 | 23729.4 | 1 | Homo sapiens (human) | ||
| 6 | F (L) | S304 Fab light chain | polymer | 215 | 23369.9 | 1 | Homo sapiens (human) | ||
| 7 | G (M) | Spike protein S1 | polymer | 209 | 23776.0 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
| 8 | H (E) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) |
Sequence modifications
M: 333 - 541 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asp 339 | Gly 339 | variant |
| Leu 371 | Ser 371 | variant |
| Pro 373 | Ser 373 | variant |
| Phe 375 | Ser 375 | variant |
| Asn 417 | Lys 417 | variant |
| Lys 440 | Asn 440 | variant |
| Ser 446 | Gly 446 | variant |
| Asn 477 | Ser 477 | variant |
| Lys 478 | Thr 478 | variant |
| Ala 484 | Glu 484 | variant |
| Arg 493 | Gln 493 | variant |
| Ser 496 | Gly 496 | variant |
| Arg 498 | Gln 498 | variant |
| Tyr 501 | Asn 501 | variant |
| His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 165310.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 570.5 | |
| All* | Total formula weight | 165881.0 |
