7WWL
S protein of Delta variant in complex with ZWD12
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1271 | 141102.3 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | H, I, J | heavy chain of ZWD12 | polymer | 123 | 13731.3 | 3 | Homo sapiens | ||
3 | L, M, N | light chain of ZWD12 | polymer | 108 | 11965.3 | 3 | Homo sapiens | ||
4 | a, b, c, d, e... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 23 | In PDB GlyTouCan (G42666HT) | |||
5 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 25 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Arg 19 | Thr 19 | variant |
Asp 144 | Gly 142 | variant |
- | Glu 156 | deletion |
- | Phe 157 | deletion |
Gly 158 | Arg 158 | variant |
Arg 452 | Leu 452 | variant |
Lys 478 | Thr 478 | variant |
Gly 614 | Asp 614 | variant |
Arg 681 | Pro 681 | variant |
Pro 817 | Phe 817 | engineered mutation |
Pro 892 | Ala 892 | engineered mutation |
Pro 899 | Ala 899 | engineered mutation |
Pro 942 | Ala 942 | engineered mutation |
Asn 950 | Asp 950 | variant |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 500396.7 | |
Branched | Number of molecules | 23 |
Total formula weight | 9761.2 | |
Non-Polymers* | Number of molecules | 25 |
Total formula weight | 5530.2 | |
All* | Total formula weight | 515688.1 |