7WPZ
Structure of PDF-2180-COV RBD binding to Bat37 ACE2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Angiotensin-converting enzyme | polymer | 595 | 69511.1 | 1 | UniProt (A0A7J7V5I6) Pfam (PF01401) In PDB | Pipistrellus pipistrellus (common pipistrelle) | |
| 2 | B | Spike glycoprotein | polymer | 204 | 22960.8 | 1 | UniProt (A0A1W6ASU7) Pfam (PF09408) In PDB | Bat coronavirus | |
| 3 | E, J, D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 4 | C | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 5 | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) |
Sequence modifications
A: 21 - 615 (UniProt: A0A7J7V5I6)
| PDB | External Database | Details |
|---|---|---|
| Glu 24 | Gly 24 | conflict |
| Asp 28 | Glu 28 | conflict |
| Glu 36 | Lys 36 | conflict |
| Glu 58 | Lys 58 | conflict |
| Arg 80 | Leu 80 | conflict |
| Asn 91 | Asp 91 | conflict |
| Leu 92 | Ser 92 | conflict |
| Glu 197 | Lys 197 | conflict |
| Gly 211 | Trp 211 | conflict |
| Glu 212 | Gly 212 | conflict |
| Gln 221 | His 221 | conflict |
| Glu 305 | Asp 305 | conflict |
| Tyr 321 | Arg 321 | conflict |
| Ser 322 | Asn 322 | conflict |
| Gln 325 | Pro 325 | conflict |
| Asn 330 | Lys 330 | conflict |
| Glu 353 | Lys 353 | conflict |
| Asn 432 | Leu 432 | conflict |
| Ile 436 | Lys 436 | conflict |
| Glu 536 | Gln 536 | conflict |
| Tyr 568 | Leu 568 | conflict |
| Asn 571 | Glu 571 | conflict |
| Arg 575 | Gly 575 | conflict |
| Lys 597 | Glu 597 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 92471.9 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2184.0 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 884.8 | |
| All* | Total formula weight | 95540.8 |
