7WP2
Cryo-EM structure of SARS-CoV-2 C.1.2 S6P trimer in complex with neutralizing antibody VacW-209 (local refinement)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | L | VacW-209 light chain | polymer | 111 | 11514.6 | 1 | UniProt (A0A5C2GQT9) Pfam (PF07686) In PDB | Homo sapiens (human) | |
| 2 | H | VacW-209 heavy chain | polymer | 131 | 14460.1 | 1 | Homo sapiens (human) | ||
| 3 | F | Spike protein S1 | polymer | 189 | 21369.0 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) |
Sequence modifications
F: 333 - 521 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| His 449 | Tyr 449 | variant |
| Lys 484 | Glu 484 | variant |
| Tyr 501 | Asn 501 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 47343.7 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| All* | Total formula weight | 47768.1 |
