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7WN2

Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(R, A)
Spike protein S1polymer22425260.32UniProt (P0DTC2)
Pfam (PF09408)
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)
2B, E
(H, B)
Fab Heavy chainpolymer22724241.42Homo sapiens (Human)
3C, F
(L, C)
Fab Light chainpolymer21423119.72Homo sapiens (Human)
4G, H, J, K, M...
(R, H, A, B, C)
SULFATE IONnon-polymer96.17Chemie (SO4)
5I, L
(R, A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.22Chemie (NAG)
6P, Q, R, S, T...
(R, H, L, A, B...)
waterwater18.0244Chemie (HOH)
Sequence modifications
R, A: 321 - 536 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Thr 537-expression tag
Gly 538-expression tag
His 539-expression tag
His 540-expression tag
His 541-expression tag
His 542-expression tag
His 543-expression tag
His 544-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight145242.8
Non-Polymers*Number of molecules9
Total formula weight1114.9
All*Total formula weight146357.7
*Water molecules are not included.

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PDB entries from 2025-12-17

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