7WGX
SARS-CoV-2 spike glycoprotein trimer in closed state after treatment with Cathepsin L
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1204 | 133657.0 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
3 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 27 | Chemie (NAG) | |||
4 | A, B, C | 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid | non-polymer | 584.7 | 3 | Chemie (BLR) |
Sequence modifications
A, B, C: 14 - 1211 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
- | Pro 681 | deletion |
- | Arg 682 | deletion |
- | Arg 683 | deletion |
- | Ala 684 | deletion |
Gly 1212 | - | expression tag |
Ser 1213 | - | expression tag |
Gly 1214 | - | expression tag |
Arg 1215 | - | expression tag |
Glu 1216 | - | expression tag |
Asn 1217 | - | expression tag |
Leu 1218 | - | expression tag |
Tyr 1219 | - | expression tag |
Phe 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 400971.0 | |
Branched | Number of molecules | 15 |
Total formula weight | 6366.0 | |
Non-Polymers* | Number of molecules | 30 |
Total formula weight | 7726.6 | |
All* | Total formula weight | 415063.6 |