7WBV
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA-directed RNA polymerase subunit | polymer | 1743 | 194107.4 | 1 | UniProt (C4R4Y0) Pfam (PF04997) Pfam (PF05001) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) In PDB | Komagataella phaffii | |
2 | B | DNA-directed RNA polymerase subunit beta | polymer | 1227 | 139746.1 | 1 | UniProt (C4QZQ7) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) In PDB | Komagataella phaffii | |
3 | C | RNA polymerase II third largest subunit B44, part of central core | polymer | 304 | 34216.3 | 1 | UniProt (C4R7L2) Pfam (PF01193) Pfam (PF01000) In PDB | Komagataella phaffii | |
4 | D | RNA polymerase II subunit B32 | polymer | 186 | 20623.0 | 1 | UniProt (C4R2U9) Pfam (PF03874) In PDB | Komagataella phaffii | |
5 | E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | polymer | 214 | 24962.7 | 1 | UniProt (C4R3P8) Pfam (PF03871) Pfam (PF01191) In PDB | Komagataella phaffii | |
6 | F | RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III | polymer | 155 | 17803.6 | 1 | UniProt (C4R1V1) Pfam (PF01192) In PDB | Komagataella phaffii | |
7 | G | RNA polymerase II subunit | polymer | 171 | 18802.6 | 1 | UniProt (C4R9A1) Pfam (PF03876) Pfam (PF00575) In PDB | Komagataella phaffii | |
8 | H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 145 | 16249.2 | 1 | UniProt (C4R273) Pfam (PF03870) In PDB | Komagataella phaffii | |
9 | I | DNA-directed RNA polymerase subunit | polymer | 115 | 13612.3 | 1 | UniProt (F2QPE6) Pfam (PF02150) Pfam (PF01096) In PDB | Komagataella phaffii | |
10 | J | RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III | polymer | 72 | 8554.1 | 1 | UniProt (C4R009) Pfam (PF01194) In PDB | Komagataella phaffii | |
11 | K | RNA polymerase II subunit B12.5 | polymer | 118 | 13832.9 | 1 | UniProt (C4R3Z5) Pfam (PF13656) In PDB | Komagataella phaffii | |
12 | L | RNA polymerase subunit ABC10-alpha | polymer | 72 | 7862.0 | 1 | UniProt (F2QMI1) Pfam (PF03604) In PDB | Komagataella phaffii | |
13 | M | Transcription elongation factor 1 homolog | polymer | 113 | 12606.9 | 1 | UniProt (C4QZ45) Pfam (PF05129) In PDB | Komagataella phaffii | |
14 | N | DNA (198-MER) | polymer | 198 | 61381.9 | 1 | synthetic construct | ||
15 | P | RNA (5'-R(P*UP*GP*GP*CP*CP*GP*UP*UP*UP*UP*CP*GP*UP*UP*GP*U)-3') | polymer | 16 | 5045.9 | 1 | synthetic construct | ||
16 | T | DNA (159-MER) | polymer | 198 | 60845.9 | 1 | synthetic construct | ||
17 | V | Transcription elongation factor SPT4 | polymer | 108 | 12039.6 | 1 | UniProt (C4R0E6) Pfam (PF06093) In PDB | Komagataella phaffii | |
18 | W | Transcription elongation factor SPT5 | polymer | 812 | 91353.4 | 1 | UniProt (F2QUC3) Pfam (PF11942) Pfam (PF03439) Pfam (PF00467) UniProt (by SIFTS) (C4R370) In PDB | Komagataella phaffii | |
19 | a, e | Histone H3.3 | polymer | 139 | 15643.3 | 2 | UniProt (P84243) Pfam (PF00125) In PDB | Homo sapiens (human) | |
20 | b, f | Histone H4 | polymer | 106 | 11676.7 | 2 | UniProt (P62805) Pfam (PF15511) In PDB | Homo sapiens (human) | |
21 | c, g | Histone H2A type 1-B/E | polymer | 133 | 14447.8 | 2 | UniProt (P04908) Pfam (PF00125) Pfam (PF16211) In PDB | Homo sapiens (human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
22 | d, h | Histone H2B type 1-J | polymer | 129 | 14217.5 | 2 | UniProt (P06899) Pfam (PF00125) In PDB | Homo sapiens (human) | Histone H2B.1,Histone H2B.r,H2B/r |
23 | A, B, C, I, J... | ZINC ION | non-polymer | 65.4 | 10 | Chemie (ZN) | |||
24 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
M: 1 - 110 (UniProt: C4QZ45)
V: 8 - 114 (UniProt: C4R0E6)
W: 1 - 809 (UniProt: F2QUC3)
a, e: 0 - 135 (UniProt: P84243)
b, f: 1 - 102 (UniProt: P62805)
c, g: 1 - 129 (UniProt: P04908)
d, h: -2 - 122 (UniProt: P06899)
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
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Met 7 | - | initiating methionine |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Pro -1 | - | expression tag |
Gly 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
Met 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
Met 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -6 | - | expression tag |
Ser -5 | - | expression tag |
His -4 | - | expression tag |
Met -3 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 26 |
Total formula weight | 865616.5 | |
Non-Polymers* | Number of molecules | 11 |
Total formula weight | 678.4 | |
All* | Total formula weight | 866294.9 |