7VYP
The structure of GdmN complex with the natural tetrahedral intermediate, carbamoylated derivative, and AMP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | GdmN | polymer | 682 | 74365.6 | 2 | UniProt (Q84G19) Pfam (PF02543) Pfam (PF16861) | Streptomyces hygroscopicus | |
| 2 | C, S (A, B) | FE (III) ION | non-polymer | 55.8 | 2 | Chemie (FE) | |||
| 3 | D, E, F, G, H... (A, B) | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
| 4 | I (A) | PHOSPHORIC ACID MONO(FORMAMIDE)ESTER | non-polymer | 141.0 | 1 | Chemie (CP) | |||
| 5 | J, K, L, M, N... (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 10 | Chemie (EDO) | |||
| 6 | P (A) | [(5S,6E,8S,9S,12R,13E,15E)-21-chloranyl-12,20-dimethoxy-6,8,16-trimethyl-5-oxidanyl-3,11-bis(oxidanylidene)-2-azabicyclo[16.3.1]docosa-1(21),6,13,15,18(22),19-hexaen-9-yl] carbamate | non-polymer | 535.0 | 1 | Chemie (82Z) | |||
| 7 | Q (A) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 1 | Chemie (AMP) | |||
| 8 | R (B) | [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl [(~{S})-azanyl-[[(5~{S},6~{E},8~{S},9~{S},12~{R},13~{E},15~{E})-21-chloranyl-12,20-dimethoxy-6,8,16-trimethyl-5-oxidanyl-3,11-bis(oxidanylidene)-2-azabicyclo[16.3.1]docosa-1(21),6,13,15,18(22),19-hexaen-9-yl]oxy]-oxidanyl-methyl] hydrogen phosphate | non-polymer | 882.3 | 1 | Chemie (8CW) | |||
| 9 | AA, BA (A, B) | water | water | 18.0 | 70 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 148731.2 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 3406.4 | |
| All* | Total formula weight | 152137.6 |
