7VFL
Crystal structure of SdgB (UDP, NAG, and O-glycosylated SD peptide-binding form)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, C) | Glycosyl transferase, group 1 family protein | polymer | 505 | 59631.3 | 2 | UniProt (A0A0H2XGN0) | Staphylococcus aureus (strain USA300) | |
| 2 | C, D (D, G) | SER-ASP-SER-ASP-SER-ASP-SER-ASP | polymer | 9 | 941.8 | 2 | synthetic construct | ||
| 3 | E, G (A, C) | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 2 | Chemie (UDP) PubChem (1158) PubChem (6031) PubChem (3084486) PubChem (6101632) PubChem (6604175) PubChem (11811538) PubChem (12049241) PubChem (25323044) PubChem (25323048) PubChem (44298965) PubChem (57448939) PubChem (53486216) PubChem (60098857) PubChem (91746160) PubChem (92332560) PubChem (92332561) PubChem (92332562) PubChem (92332563) PubChem (93088131) PubChem (93630083) | |||
| 4 | F, H, I, J, K (A, C, D, G) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
| 5 | L, M (A, C) | water | water | 18.0 | 24 | Chemie (HOH) |
Sequence modifications
A, C: 1 - 496 (UniProt: A0A0H2XGN0)
| PDB | External Database | Details |
|---|---|---|
| Ala 0 | - | expression tag |
| Leu 497 | - | expression tag |
| Glu 498 | - | expression tag |
| His 499 | - | expression tag |
| His 500 | - | expression tag |
| His 501 | - | expression tag |
| His 502 | - | expression tag |
| His 503 | - | expression tag |
| His 504 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 121146.2 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 1914.4 | |
| All* | Total formula weight | 123060.5 |
