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7VDR

The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 13

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Cyclin-dependent-like kinase 5polymer29233306.32UniProt (Q00535)
Pfam (PF00069)
Homo sapiens (Human)Cell division protein kinase 5
2C, D
(C, D)
Cyclin-dependent kinase 5 activator 1, p25polymer20923331.92UniProt (Q15078)
Pfam (PF03261)
Homo sapiens (Human)
3E, O
(A, B)
(1R)-1-[7-[(2-fluoranyl-4-pyrazol-1-yl-phenyl)amino]-1,6-naphthyridin-2-yl]-1-(1-methylpiperidin-4-yl)ethanolnon-polymer446.52Chemie (63I)
4F
(A)
TRIETHYLENE GLYCOLnon-polymer150.21Chemie (PGE)
5G, H, I, J, K...
(A, C)
1,2-ETHANEDIOLnon-polymer62.19Chemie (EDO)
6Q, R, S
(A, B, C)
waterwater18.069Chemie (HOH)
Sequence modifications
A, B: 2 - 292 (UniProt: Q00535)
PDBExternal DatabaseDetails
Ser 1-expression tag
C, D: 100 - 307 (UniProt: Q15078)
PDBExternal DatabaseDetails
Met 99-initiating methionine
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight113276.4
Non-Polymers*Number of molecules12
Total formula weight1601.8
All*Total formula weight114878.3
*Water molecules are not included.

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PDB entries from 2025-08-27

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