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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7VD5

Structure of C2S2M2-type PSII-FCPII supercomplex from diatom

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, aPhotosystem II protein D1polymer33437036.22UniProt (A0A679C261)
Pfam (PF00124)
In PDB		Chaetoceros gracilis
2B, bPhotosystem II CP47 reaction center proteinpolymer48453762.22UniProt (A0A679C6E3)
Pfam (PF00421)
In PDB		Chaetoceros gracilis
3C, cPhotosystem II CP43 reaction center proteinpolymer45149468.42UniProt (A0A679BVV7)
Pfam (PF00421)
In PDB		Chaetoceros gracilis
4D, dPhotosystem II D2 proteinpolymer34137983.32UniProt (A0A679C012)
Pfam (PF00124)
In PDB		Chaetoceros gracilis
5E, eCytochrome b559 subunit alphapolymer758687.82UniProt (A0A679C209)
Pfam (PF00283)
Pfam (PF00284)
In PDB		Chaetoceros gracilisPSII reaction center subunit V
6F, fCytochrome b559 subunit betapolymer283207.92UniProt (A0A679BVT0)
Pfam (PF00283)
In PDB		Chaetoceros gracilisPSII reaction center subunit VI
7H, hPhotosystem II reaction center protein Hpolymer667287.62UniProt (B7XBY7)
Pfam (PF00737)
In PDB		Chaetoceros gracilisPSII-H
8I, iPhotosystem II reaction center protein Ipolymer354069.92UniProt (A0A679BVT8)
Pfam (PF02532)
In PDB		Chaetoceros gracilis
9J, jPhotosystem II reaction center protein Jpolymer343589.32UniProt (A0A679C298)
Pfam (PF01788)
In PDB		Chaetoceros gracilis
10K, kPhotosystem II reaction center protein Kpolymer374220.12UniProt (A0A679BWI3)
Pfam (PF02533)
In PDB		Chaetoceros gracilis
11L, lPhotosystem II reaction center protein Lpolymer384367.12UniProt (A0A679C262)
Pfam (PF02419)
In PDB		Chaetoceros gracilis
12M, mPhotosystem II subunitpolymer424473.12UniProt (A0A679C2A0)
In PDB		Chaetoceros gracilis
13O, oExtrinsic protein in photosystem IIpolymer24526419.92UniProt (B6ZHE8)
Pfam (PF01716)
In PDB		Chaetoceros gracilis
14T, tPhotosystem II reaction center protein Tpolymer303554.42UniProt (A0A679C6E6)
Pfam (PF01405)
In PDB		Chaetoceros gracilis
15U, uExtrinsic protein in photosystem IIpolymer9310137.52UniProt (B6ZHF0)
Pfam (PF06514)
In PDB		Chaetoceros gracilisExtrinsic protein U of oxygen-evolving complex
16V, vCytochrome c-550polymer13614780.72UniProt (B6ZHF4)
Pfam (PF14495)
In PDB		Chaetoceros gracilisCytochrome c550
17Y, yPhotosystem II reaction center protein Ycf12polymer343609.52UniProt (A0A679BVT2)
Pfam (PF05969)
In PDB		Chaetoceros gracilis
18X, xPhotosystem II reaction center X proteinpolymer373772.62UniProt (B6ZHF2)
Pfam (PF06596)
In PDB		Chaetoceros gracilis
19Z, zPhotosystem II reaction center protein Zpolymer596328.72UniProt (A0A679C215)
Pfam (PF01737)
In PDB		Chaetoceros gracilis
20Q, qExtrinsic protein in photosystem IIpolymer15116731.72UniProt (B6ZHE9)
In PDB		Chaetoceros gracilis
21W, wPhotosystem II reaction center protein Wpolymer525944.42UniProt (A0A679C6E8)
In PDB		Chaetoceros gracilis
220, 5Unknown protein 0polymer312656.32Chaetoceros gracilis
231, 6Unknown protein 1polymer302571.22Chaetoceros gracilis
2411, 31Chlorophyll a/b-binding proteinpolymer17619109.62UniProt (A0A679BXP6)
Pfam (PF00504)
In PDB		Chaetoceros gracilis
2512, 32Fcpb2, Fucoxanthin chlorophyll a/c-binding proteinpolymer16918525.92Chaetoceros gracilis
2613, 33Chlorophyll a/b-binding proteinpolymer16918448.92UniProt (A0A679BXP6)
Pfam (PF00504)
In PDB		Chaetoceros gracilis
2714, 34Chlorophyll a/b-binding proteinpolymer17218768.22UniProt (A0A679BXP6)
Pfam (PF00504)
In PDB		Chaetoceros gracilis
2815, 35Chlorophyll a/b-binding proteinpolymer17018596.12UniProt (A0A679BXP6)
Pfam (PF00504)
In PDB		Chaetoceros gracilis
2916, 36Fcpb3, Fucoxanthin chlorophyll a/c-binding proteinpolymer17919621.02Chaetoceros gracilis
3017, 37Fcpb4, Fucoxanthin chlorophyll a/c-binding proteinpolymer17619202.52Chaetoceros gracilis
3118, 38Chlorophyll a/b-binding proteinpolymer16818351.82UniProt (A0A679BXP6)
Pfam (PF00504)
In PDB		Chaetoceros gracilis
3219, 39Fcpb5, Fucoxanthin chlorophyll a/c-binding proteinpolymer22724681.82Chaetoceros gracilis
3320, 40Fcpb6, Fucoxanthin chlorophyll a/c-binding proteinpolymer15516968.52Chaetoceros gracilis
3421, 41Fcpb7, Fucoxanthin chlorophyll a/c-binding proteinpolymer16217888.52Chaetoceros gracilis
35A, aCA-MN4-O5 CLUSTERnon-polymer339.82Chemie (OEX)
36A, aFE (II) IONnon-polymer55.82Chemie (FE2)
37B, C, b, 14, 20...CHLOROPHYLL Anon-polymer893.5220Chemie (CLA)
38A, D, aPHEOPHYTIN Anon-polymer871.24Chemie (PHO)
39b, a, H, h, K...BETA-CAROTENEnon-polymer536.924Chemie (BCR)
4036, L, 40, B, 16...1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.110Chemie (SQD)
41a, D, d, 11, 36...1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.222Chemie (LMG)
42a, ABICARBONATE IONnon-polymer61.02Chemie (BCT)
43D, d, a, 21, 41...1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.016Chemie (LHG)
44H, h, J, j, C...DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.38Chemie (DGD)
45d, D2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEnon-polymer749.24Chemie (PL9)
46F, f, v, VPROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
4717, 18, 36, 20, 35...Chlorophyll c1non-polymer610.970Chemie (KC1)
4811, 15, 21, 40, 12...(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetatenon-polymer658.9108Chemie (A86)
4912, 37, 15, 11, 18...UNKNOWN LIGANDnon-polymer38Chemie (UNL)
5021, 40, 36, 20, 39...(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diolnon-polymer582.912Chemie (DD6)
5139, 19DODECYL-ALPHA-D-MALTOSIDEnon-polymer510.62Chemie (LMU)
52waterwater18.052Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains68
Total formula weight1049644.5
Non-Polymers*Number of molecules548
Total formula weight385687.2
All*Total formula weight1435331.7
*Water molecules are not included.

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PDB entries from 2024-10-16

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