7VD5
Structure of C2S2M2-type PSII-FCPII supercomplex from diatom
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, X (A, a) | Photosystem II protein D1 | polymer | 334 | 37036.2 | 2 | UniProt (A0A679C261) | Chaetoceros gracilis | |
| 2 | B, Y (B, b) | Photosystem II CP47 reaction center protein | polymer | 484 | 53762.2 | 2 | UniProt (A0A679C6E3) | Chaetoceros gracilis | |
| 3 | C, Z (C, c) | Photosystem II CP43 reaction center protein | polymer | 451 | 49468.4 | 2 | UniProt (A0A679BVV7) | Chaetoceros gracilis | |
| 4 | AA, D (D, d) | Photosystem II D2 protein | polymer | 341 | 37983.3 | 2 | UniProt (A0A679C012) | Chaetoceros gracilis | |
| 5 | BA, E (E, e) | Cytochrome b559 subunit alpha | polymer | 75 | 8687.8 | 2 | UniProt (A0A679C209) | Chaetoceros gracilis | PSII reaction center subunit V |
| 6 | CA, F (F, f) | Cytochrome b559 subunit beta | polymer | 28 | 3207.9 | 2 | UniProt (A0A679BVT0) | Chaetoceros gracilis | PSII reaction center subunit VI |
| 7 | DA, G (H, h) | Photosystem II reaction center protein H | polymer | 66 | 7287.6 | 2 | UniProt (B7XBY7) | Chaetoceros gracilis | PSII-H |
| 8 | EA, H (I, i) | Photosystem II reaction center protein I | polymer | 35 | 4069.9 | 2 | UniProt (A0A679BVT8) | Chaetoceros gracilis | |
| 9 | FA, I (J, j) | Photosystem II reaction center protein J | polymer | 34 | 3589.3 | 2 | UniProt (A0A679C298) | Chaetoceros gracilis | |
| 10 | GA, J (K, k) | Photosystem II reaction center protein K | polymer | 37 | 4220.1 | 2 | UniProt (A0A679BWI3) | Chaetoceros gracilis | |
| 11 | HA, K (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4367.1 | 2 | UniProt (A0A679C262) | Chaetoceros gracilis | |
| 12 | IA, L (M, m) | Photosystem II subunit | polymer | 42 | 4473.1 | 2 | UniProt (A0A679C2A0) | Chaetoceros gracilis | |
| 13 | JA, M (O, o) | Extrinsic protein in photosystem II | polymer | 245 | 26419.9 | 2 | UniProt (B6ZHE8) | Chaetoceros gracilis | |
| 14 | KA, N (T, t) | Photosystem II reaction center protein T | polymer | 30 | 3554.4 | 2 | UniProt (A0A679C6E6) | Chaetoceros gracilis | |
| 15 | LA, O (U, u) | Extrinsic protein in photosystem II | polymer | 93 | 10137.5 | 2 | UniProt (B6ZHF0) | Chaetoceros gracilis | Extrinsic protein U of oxygen-evolving complex |
| 16 | MA, P (V, v) | Cytochrome c-550 | polymer | 136 | 14780.7 | 2 | UniProt (B6ZHF4) | Chaetoceros gracilis | Cytochrome c550 |
| 17 | NA, Q (Y, y) | Photosystem II reaction center protein Ycf12 | polymer | 34 | 3609.5 | 2 | UniProt (A0A679BVT2) | Chaetoceros gracilis | |
| 18 | OA, R (X, x) | Photosystem II reaction center X protein | polymer | 37 | 3772.6 | 2 | UniProt (B6ZHF2) | Chaetoceros gracilis | |
| 19 | PA, S (Z, z) | Photosystem II reaction center protein Z | polymer | 59 | 6328.7 | 2 | UniProt (A0A679C215) | Chaetoceros gracilis | |
| 20 | QA, T (Q, q) | Extrinsic protein in photosystem II | polymer | 151 | 16731.7 | 2 | UniProt (B6ZHE9) | Chaetoceros gracilis | |
| 21 | RA, U (W, w) | Photosystem II reaction center protein W | polymer | 52 | 5944.4 | 2 | UniProt (A0A679C6E8) | Chaetoceros gracilis | |
| 22 | SA, V (0, 5) | Unknown protein 0 | polymer | 31 | 2656.3 | 2 | Chaetoceros gracilis | ||
| 23 | TA, W (1, 6) | Unknown protein 1 | polymer | 30 | 2571.2 | 2 | Chaetoceros gracilis | ||
| 24 | FB, UA (11, 31) | Chlorophyll a/b-binding protein | polymer | 176 | 19109.6 | 2 | UniProt (A0A679BXP6) | Chaetoceros gracilis | |
| 25 | GB, VA (12, 32) | Fcpb2, Fucoxanthin chlorophyll a/c-binding protein | polymer | 169 | 18525.9 | 2 | Chaetoceros gracilis | ||
| 26 | HB, WA (13, 33) | Chlorophyll a/b-binding protein | polymer | 169 | 18448.9 | 2 | UniProt (A0A679BXP6) | Chaetoceros gracilis | |
| 27 | IB, XA (14, 34) | Chlorophyll a/b-binding protein | polymer | 172 | 18768.2 | 2 | UniProt (A0A679BXP6) | Chaetoceros gracilis | |
| 28 | JB, YA (15, 35) | Chlorophyll a/b-binding protein | polymer | 170 | 18596.1 | 2 | UniProt (A0A679BXP6) | Chaetoceros gracilis | |
| 29 | KB, ZA (16, 36) | Fcpb3, Fucoxanthin chlorophyll a/c-binding protein | polymer | 179 | 19621.0 | 2 | Chaetoceros gracilis | ||
| 30 | AB, LB (17, 37) | Fcpb4, Fucoxanthin chlorophyll a/c-binding protein | polymer | 176 | 19202.5 | 2 | Chaetoceros gracilis | ||
| 31 | BB, MB (18, 38) | Chlorophyll a/b-binding protein | polymer | 168 | 18351.8 | 2 | UniProt (A0A679BXP6) | Chaetoceros gracilis | |
| 32 | CB, NB (19, 39) | Fcpb5, Fucoxanthin chlorophyll a/c-binding protein | polymer | 227 | 24681.8 | 2 | Chaetoceros gracilis | ||
| 33 | DB, OB (20, 40) | Fcpb6, Fucoxanthin chlorophyll a/c-binding protein | polymer | 155 | 16968.5 | 2 | Chaetoceros gracilis | ||
| 34 | EB, PB (21, 41) | Fcpb7, Fucoxanthin chlorophyll a/c-binding protein | polymer | 162 | 17888.5 | 2 | Chaetoceros gracilis | ||
| 35 | QB, RE (A, a) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 36 | RB, SE (A, a) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 37 | AC, AD, AG, AK, AO... (B, C, b, 14, 20...) | CHLOROPHYLL A | non-polymer | 893.5 | 220 | Chemie (CLA) | |||
| 38 | TB, UD, VE, WE (A, D, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 39 | BG, DF, FE, FH, IE... (b, a, H, h, K...) | BETA-CAROTENE | non-polymer | 536.9 | 24 | Chemie (BCR) PubChem (573) PubChem (5315709) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (6477957) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (5280489) PubChem (92863345) PubChem (54603957) PubChem (54612003) PubChem (124919640) PubChem (146673260) PubChem (152743364) PubChem (160505766) PubChem (86765360) PubChem (91827292) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (124919639) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 40 | HT, JE, PV, SC, SL... (36, L, 40, B, 16...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 10 | Chemie (SQD) PubChem (5459390) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (134765349) PubChem (102201395) | |||
| 41 | AF, DE, DH, EI, FI... (a, D, d, 11, 36...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 22 | Chemie (LMG) | |||
| 42 | BF, YB (a, A) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 43 | AE, BE, BH, CE, CF... (D, d, a, 21, 41...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 16 | Chemie (LHG) PubChem (446440) PubChem (9547104) PubChem (11846227) PubChem (46936292) PubChem (65144) PubChem (13305396) PubChem (73416066) PubChem (138986743) | |||
| 44 | GE, GH, HE, HH, OD... (H, h, J, j, C...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) PubChem (448441) PubChem (24865462) PubChem (24865463) PubChem (46936671) PubChem (50904896) PubChem (447899) PubChem (4629344) PubChem (53480668) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 45 | AH, VD, WG, ZD (d, D) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) PubChem (20286) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) PubChem (23304240) PubChem (21881166) | |||
| 46 | EE, EH, JH, LE (F, f, v, V) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
| 47 | AM, AN, AT, BM, BO... (17, 18, 36, 20, 35...) | Chlorophyll c1 | non-polymer | 610.9 | 70 | Chemie (KC1) | |||
| 48 | AI, AL, AP, AW, BI... (11, 15, 21, 40, 12...) | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate | non-polymer | 658.9 | 108 | Chemie (A86) PubChem (91530) PubChem (541529) PubChem (10009558) PubChem (15559433) PubChem (15559434) PubChem (15559435) PubChem (21776532) PubChem (46781664) PubChem (59370904) PubChem (59438846) PubChem (177442568) PubChem (88873479) PubChem (91266697) PubChem (5281239) PubChem (101608998) PubChem (102200897) PubChem (5364094) PubChem (124298579) PubChem (124298578) PubChem (124298576) PubChem (125183403) PubChem (9961263) PubChem (140222158) PubChem (15559432) PubChem (162962337) PubChem (163285374) PubChem (89808300) PubChem (90784335) PubChem (102200898) PubChem (102232483) PubChem (123264561) PubChem (124298577) PubChem (138115313) PubChem (140222160) PubChem (154828419) PubChem (162962338) PubChem (162962339) PubChem (162962340) PubChem (162962341) PubChem (172812670) | |||
| 49 | AJ, AU, BL, BU, CL... (12, 37, 15, 11, 18...) | UNKNOWN LIGAND | non-polymer | 38 | Chemie (UNL) | ||||
| 50 | BP, BW, ET, JO, JV... (21, 40, 36, 20, 39...) | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol | non-polymer | 582.9 | 12 | Chemie (DD6) PubChem (6449888) PubChem (10579169) PubChem (11621213) PubChem (14160123) PubChem (102007228) PubChem (10817096) PubChem (172636470) PubChem (72964028) PubChem (137349167) PubChem (162909187) PubChem (172781022) | |||
| 51 | MV, YN (39, 19) | DODECYL-ALPHA-D-MALTOSIDE | non-polymer | 510.6 | 2 | Chemie (LMU) PubChem (114880) PubChem (445456) PubChem (3481630) PubChem (9849225) PubChem (10413991) PubChem (16220143) PubChem (24802120) PubChem (25021193) PubChem (44119948) PubChem (46936627) PubChem (59615220) PubChem (2802066) PubChem (90817611) PubChem (95566087) PubChem (53393702) PubChem (102565427) PubChem (56845466) PubChem (58112562) PubChem (58253045) PubChem (140505128) PubChem (153835411) PubChem (155885597) PubChem (169619620) PubChem (173767704) PubChem (173885518) PubChem (60087035) PubChem (68322761) PubChem (68338004) PubChem (68441652) PubChem (70796428) PubChem (70813879) PubChem (70839937) PubChem (75487624) PubChem (89796216) PubChem (91094859) PubChem (91608950) PubChem (95566088) PubChem (95566089) PubChem (95566090) PubChem (96327540) PubChem (97038234) PubChem (97038235) PubChem (97294875) PubChem (98046621) PubChem (98046622) PubChem (98046623) PubChem (100976848) PubChem (101111379) PubChem (101111381) PubChem (102219025) PubChem (117716045) PubChem (117753833) PubChem (118443377) PubChem (123281924) PubChem (124184997) PubChem (124196217) PubChem (124196220) PubChem (126735853) PubChem (126735860) PubChem (129720403) PubChem (134694723) PubChem (140479759) PubChem (140841257) PubChem (154810097) PubChem (159812235) PubChem (163184859) | |||
| 52 | AX, BX, CX, DX, EX... (z, 11, 12, 13, 14...) | water | water | 18.0 | 52 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 68 |
| Total formula weight | 1049644.5 | |
| Non-Polymers* | Number of molecules | 548 |
| Total formula weight | 385687.2 | |
| All* | Total formula weight | 1435331.7 |
