7VB6
Crystal structure of hydroxynitrile lyase from Linum usitatissium complexed with (R)-2-hydroxy-2-methylbutanenitrile
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D (A, B, C, D) | Aliphatic (R)-hydroxynitrile lyase | polymer | 443 | 48167.2 | 4 | UniProt (P93243) Pfam (PF08240) Pfam (PF00107) | Linum usitatissimum (flax) | LuHNL |
2 | CA, E, HA, S (C, A, D, B) | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 4 | Chemie (NAD) | |||
3 | DA, EA, F, G, IA... (C, A, D, B) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
4 | FA, H, KA, V (C, A, D, B) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
5 | GA, I, LA, W (C, A, D, B) | (2R)-2-methyl-2-oxidanyl-butanenitrile | non-polymer | 99.1 | 4 | Chemie (5Z9) | |||
6 | J, K, L, M, MA... (A, D, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 8 | Chemie (EDO) | |||
7 | AA, BA, O, Z (B, A) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
8 | NA, P, Q, R (D, A) | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 209.2 | 4 | Chemie (BTB) | |||
9 | OA, PA, QA, RA (A, B, C, D) | water | water | 18.0 | 1422 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 422 (UniProt: P93243)
PDB | External Database | Details |
---|---|---|
Met -20 | - | initiating methionine |
Gly -19 | - | expression tag |
Ser -18 | - | expression tag |
Ser -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
Ser -10 | - | expression tag |
Ser -9 | - | expression tag |
Gly -8 | - | expression tag |
Leu -7 | - | expression tag |
Val -6 | - | expression tag |
Pro -5 | - | expression tag |
Arg -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
Met 0 | - | expression tag |
Thr 117 | Val 117 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 192668.8 | |
Non-Polymers* | Number of molecules | 36 |
Total formula weight | 5372.6 | |
All* | Total formula weight | 198041.4 |