7V7Z
Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1280 | 141830.9 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | D, E, F | Angiotensin-converting enzyme 2,Green fluorescent protein | polymer | 861 | 98273.5 | 3 | UniProt (Q9BYF1) Pfam (PF01401) Pfam (PF01353) UniProt (by SIFTS) (A0A059PIQ0) In PDB | Homo sapiens (Human) | Angiotensin-converting enzyme homolog,ACEH,Angiotensin-converting enzyme-related carboxypeptidase,ACE-related carboxypeptidase,Metalloprotease MPROT15 |
3 | a, b, c, d, e... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 31 | In PDB GlyTouCan (G42666HT) | |||
4 | C, D, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 17 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1205 (UniProt: P0DTC2)
D, E, F: 1 - 615 (UniProt: Q9BYF1)
D, E, F: 616 - 861 (PDB: 7V7Z)
PDB | External Database | Details |
---|---|---|
Phe 18 | Leu 18 | variant |
Ala 80 | Asp 80 | variant |
Gly 215 | Asp 215 | variant |
- | Leu 241 | deletion |
- | Leu 242 | deletion |
- | Ala 243 | deletion |
Ile 243 | Arg 246 | engineered mutation |
Asn 414 | Lys 417 | variant |
Lys 481 | Glu 484 | variant |
Tyr 498 | Asn 501 | variant |
Gly 611 | Asp 614 | variant |
Gly 679 | Arg 682 | engineered mutation |
Ser 680 | Arg 683 | engineered mutation |
Ser 682 | Arg 685 | engineered mutation |
Val 698 | Ala 701 | variant |
Pro 983 | Lys 986 | engineered mutation |
Pro 984 | Val 987 | engineered mutation |
Glu 1206 | - | expression tag |
Phe 1207 | - | expression tag |
Gly 1208 | - | expression tag |
Ser 1209 | - | expression tag |
Gly 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Lys 1238 | - | expression tag |
Gly 1239 | - | expression tag |
Gln 1240 | - | expression tag |
Asp 1241 | - | expression tag |
Asn 1242 | - | expression tag |
Ser 1243 | - | expression tag |
Ala 1244 | - | expression tag |
Asp 1245 | - | expression tag |
Ile 1246 | - | expression tag |
Gln 1247 | - | expression tag |
His 1248 | - | expression tag |
Ser 1249 | - | expression tag |
Gly 1250 | - | expression tag |
Arg 1251 | - | expression tag |
Pro 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Glu 1254 | - | expression tag |
Ser 1255 | - | expression tag |
Arg 1256 | - | expression tag |
Gly 1257 | - | expression tag |
Pro 1258 | - | expression tag |
Phe 1259 | - | expression tag |
Glu 1260 | - | expression tag |
Gln 1261 | - | expression tag |
Lys 1262 | - | expression tag |
Leu 1263 | - | expression tag |
Ile 1264 | - | expression tag |
Ser 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Glu 1267 | - | expression tag |
Asp 1268 | - | expression tag |
Leu 1269 | - | expression tag |
Asn 1270 | - | expression tag |
Met 1271 | - | expression tag |
His 1272 | - | expression tag |
Thr 1273 | - | expression tag |
Gly 1274 | - | expression tag |
His 1275 | - | expression tag |
His 1276 | - | expression tag |
His 1277 | - | expression tag |
His 1278 | - | expression tag |
His 1279 | - | expression tag |
His 1280 | - | expression tag |
D, E, F: 616 - 861 (PDB: 7V7Z)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 720313.2 | |
Branched | Number of molecules | 31 |
Total formula weight | 13156.4 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 3760.5 | |
All* | Total formula weight | 737230.2 |