7V77
Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, two RBD-up conformation
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1280 | 141830.9 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | a, b, c, D, d... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 30 | In PDB GlyTouCan (G42666HT) | |||
3 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 17 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1205 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Phe 18 | Leu 18 | variant |
Ala 80 | Asp 80 | variant |
Gly 215 | Asp 215 | variant |
- | Leu 241 | deletion |
- | Leu 242 | deletion |
- | Ala 243 | deletion |
Ile 243 | Arg 246 | variant |
Asn 414 | Lys 417 | variant |
Lys 481 | Glu 484 | variant |
Tyr 498 | Asn 501 | variant |
Gly 611 | Asp 614 | variant |
Gly 679 | Arg 682 | conflict |
Ser 680 | Arg 683 | conflict |
Ser 682 | Arg 685 | conflict |
Val 698 | Ala 701 | variant |
Pro 983 | Lys 986 | conflict |
Pro 984 | Val 987 | conflict |
Glu 1206 | - | expression tag |
Phe 1207 | - | expression tag |
Gly 1208 | - | expression tag |
Ser 1209 | - | expression tag |
Gly 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Lys 1238 | - | expression tag |
Gly 1239 | - | expression tag |
Gln 1240 | - | expression tag |
Asp 1241 | - | expression tag |
Asn 1242 | - | expression tag |
Ser 1243 | - | expression tag |
Ala 1244 | - | expression tag |
Asp 1245 | - | expression tag |
Ile 1246 | - | expression tag |
Gln 1247 | - | expression tag |
His 1248 | - | expression tag |
Ser 1249 | - | expression tag |
Gly 1250 | - | expression tag |
Arg 1251 | - | expression tag |
Pro 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Glu 1254 | - | expression tag |
Ser 1255 | - | expression tag |
Arg 1256 | - | expression tag |
Gly 1257 | - | expression tag |
Pro 1258 | - | expression tag |
Phe 1259 | - | expression tag |
Glu 1260 | - | expression tag |
Gln 1261 | - | expression tag |
Lys 1262 | - | expression tag |
Leu 1263 | - | expression tag |
Ile 1264 | - | expression tag |
Ser 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Glu 1267 | - | expression tag |
Asp 1268 | - | expression tag |
Leu 1269 | - | expression tag |
Asn 1270 | - | expression tag |
Met 1271 | - | expression tag |
His 1272 | - | expression tag |
Thr 1273 | - | expression tag |
Gly 1274 | - | expression tag |
His 1275 | - | expression tag |
His 1276 | - | expression tag |
His 1277 | - | expression tag |
His 1278 | - | expression tag |
His 1279 | - | expression tag |
His 1280 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 425492.8 | |
Branched | Number of molecules | 30 |
Total formula weight | 12732.0 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 3760.5 | |
All* | Total formula weight | 441985.4 |